View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10653_6 (Length: 347)
Name: NF10653_6
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10653_6 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 39060632 - 39060450
Alignment:
| Q |
1 |
taacgaactggaaaatctttttacttcttcgttatcttggacactacctcaatgaaaggctctttcatagcagcagaatgattctctgaataatttatga |
100 |
Q |
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| T |
39060632 |
taacgaactggaaaatctttttacttcttcgttatcttggacactacctcaatgaaaggctctttcatagcagcagaatgattctctgaataatttatga |
39060533 |
T |
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| Q |
101 |
ctgcatgatctccaagtcatgaacaacgttgggatttaaaatatctaaaatttaatccaaacatgtcacttcatcactccaaa |
183 |
Q |
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| T |
39060532 |
ttgcataatctccaaatcatgagcaacgttggaatttaagatatctaaaatataatccaaacatgtcacttcatcactccaaa |
39060450 |
T |
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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 44575296 - 44575373
Alignment:
| Q |
179 |
ccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggat |
256 |
Q |
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| T |
44575296 |
ccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggat |
44575373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 21514947 - 21514884
Alignment:
| Q |
35 |
tcttggacactacctcaatgaaaggctctttcatagcagcagaatgattctctgaataatttat |
98 |
Q |
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| T |
21514947 |
tcttggagactacctcaatgaaaggctcttccatagcagcagaacaattctttaaataatttat |
21514884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 13711465 - 13711557
Alignment:
| Q |
6 |
aactggaaaatctttttacttcttcgttatcttggacactacctcaatgaaaggctctttcatagcagcagaatgattctctgaataatttat |
98 |
Q |
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|||| ||||| | |||| |||||| || |||||||||| ||||||| ||||||||||| ||| || ||||| |||||| | |||||||||| |
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| T |
13711465 |
aactagaaaacccttttgcttcttgtttttcttggacaccacctcaaagaaaggctcttcaataacaacagaacgattctttaaataatttat |
13711557 |
T |
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