View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10653_7 (Length: 333)
Name: NF10653_7
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10653_7 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 38153819 - 38153999
Alignment:
| Q |
30 |
gcgagttatgccgtttttcagattgcacttgccagacttgtactgactttacaaggaatgccaaggcttgagttcatatcatcatattcctaaatcctga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38153819 |
gcgagttatgccgtttttcagattgcacttgccagacttgtactgactttacaaggaatgccaaggcttgagttcatatcatcatattcctaaatcttga |
38153918 |
T |
|
| Q |
130 |
tatttttagtacctttttgttcgtatggactgatttgccagtcctaatcaagtgtttaagattctaatgtactggataatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38153919 |
tatttttagtacctttttgttcgtatggactgatttgccagtcctaatcaagtgtttaagattctaatgtaatggataatt |
38153999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 38168423 - 38168551
Alignment:
| Q |
205 |
ataattaattgagttcaatcaaatgattagctccatatatttcttttccgtgttttgttaacattgcttcttcctgattacaagatattgtattcttaga |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
38168423 |
ataattaattgatttcaatcaaatgattagctccatatatttcttttccgtgttttcttaacattgcttcttcctaattacaagatattgtattctcaga |
38168522 |
T |
|
| Q |
305 |
actaagtaagatgattcaacaaaaggttg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38168523 |
actaagtaagatgattcaacaaaaggttg |
38168551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 38169689 - 38169730
Alignment:
| Q |
35 |
ttatgccgtttttcagattgcacttgccagacttgtactgac |
76 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38169689 |
ttatgccgcttttcggattgcacttgccagacctgtactgac |
38169730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 26024 - 26067
Alignment:
| Q |
38 |
tgccgtttttcagattgcacttgccagacttgtactgactttac |
81 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26024 |
tgccgtttttcagattgcgactgccagacttgtactgactttac |
26067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University