View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10653_high_1 (Length: 250)
Name: NF10653_high_1
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10653_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30671682 - 30671920
Alignment:
| Q |
1 |
tttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30671682 |
tttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctt |
30671781 |
T |
|
| Q |
101 |
tgaccctttgaacagaaaaattgagaacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30671782 |
tgaccctttgaacagaaaaattgagcacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgt |
30671881 |
T |
|
| Q |
201 |
tccaagccaaacccttttaccaccccttgttgtgtctct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30671882 |
tccaagccaaacccttttaccaccccttgttgtgtctct |
30671920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30689577 - 30689816
Alignment:
| Q |
1 |
tttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctt |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30689577 |
tttgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctt |
30689676 |
T |
|
| Q |
101 |
tgaccctttgaacagaaaaattgagaacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgt |
200 |
Q |
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|
||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30689677 |
tgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgt |
30689776 |
T |
|
| Q |
201 |
tccaagccaaacccttttaccaccccttgttgtgtctctg |
240 |
Q |
| |
|
|||||||||||||||| | || || ||||||||||||||| |
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| T |
30689777 |
tccaagccaaacccttcttcctcctcttgttgtgtctctg |
30689816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30656521 - 30656756
Alignment:
| Q |
1 |
tttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctt |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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| T |
30656521 |
tttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctt |
30656620 |
T |
|
| Q |
101 |
tgaccctttgaacagaaaaattgagaacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30656621 |
tgaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgt |
30656720 |
T |
|
| Q |
201 |
tccaagccaaacccttttaccaccccttgttgtgtc |
236 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||||| |
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|
| T |
30656721 |
tcctaaccaaacccttttgccaccccttgttgtgtc |
30656756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 30718622 - 30718858
Alignment:
| Q |
3 |
tgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctttg |
102 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
30718622 |
tgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttg |
30718721 |
T |
|
| Q |
103 |
accctttgaacagaaaaattgagaacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttc |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
30718722 |
accctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc |
30718821 |
T |
|
| Q |
203 |
caagccaaacccttttaccaccccttgttgtgtctct |
239 |
Q |
| |
|
|||||||||||||| | || || |||||||| ||||| |
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|
| T |
30718822 |
caagccaaacccttcttcctcctcttgttgtatctct |
30718858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30698463 - 30698702
Alignment:
| Q |
1 |
tttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| || || || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
30698463 |
tttgataacatttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctt |
30698562 |
T |
|
| Q |
101 |
tgaccctttgaacagaaaaattgagaacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30698563 |
tgaccctttgaacagaaaaattgagcacagcattattacctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgt |
30698662 |
T |
|
| Q |
201 |
tccaagccaaacccttttaccaccccttgttgtgtctctg |
240 |
Q |
| |
|
||| |||||||| ||| | || || |||||||| |||||| |
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|
| T |
30698663 |
tcctagccaaactcttcttcctcctcttgttgtatctctg |
30698702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 30710371 - 30710585
Alignment:
| Q |
26 |
agtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctttgaccctttgaacagaaaaattgag |
125 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||| |
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|
| T |
30710371 |
agtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaaagaaaaattgag |
30710470 |
T |
|
| Q |
126 |
aacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccc |
225 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | || || |
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|
| T |
30710471 |
gaaagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcct |
30710570 |
T |
|
| Q |
226 |
cttgttgtgtctctg |
240 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
30710571 |
cttgttgtatctctg |
30710585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 16252066 - 16252144
Alignment:
| Q |
138 |
acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaaccctt |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||||| ||||||||||| | ||| |||||| |
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|
| T |
16252066 |
acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt |
16252144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 33042678 - 33042601
Alignment:
| Q |
138 |
acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaaccct |
215 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||| ||||| ||||| ||||| ||||| |
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|
| T |
33042678 |
acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct |
33042601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 30623894 - 30623949
Alignment:
| Q |
157 |
gcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||||||| |||| |||||| |
|
|
| T |
30623894 |
gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaac |
30623949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 56539345 - 56539186
Alignment:
| Q |
53 |
gtgaagacccttctctgcaatcatattgaatctcttgcaaagaatctttgaccctttgaacagaaaaattgagaacagcattattacctctcattgaaaa |
152 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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|
| T |
56539345 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaa |
56539246 |
T |
|
| Q |
153 |
tgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
56539245 |
tgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac |
56539186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 56539380 - 56539345
Alignment:
| Q |
4 |
gataacatttttctttgttcacagtgtctctccttg |
39 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
56539380 |
gataacatctttctttgttcacagtgtctctccttg |
56539345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 4420146 - 4420204
Alignment:
| Q |
154 |
gcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac |
212 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||| | |||||||| ||||||||||| |
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|
| T |
4420146 |
gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac |
4420204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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