View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10654_low_3 (Length: 239)
Name: NF10654_low_3
Description: NF10654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10654_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9586748 - 9586970
Alignment:
| Q |
1 |
aaaagtaatgtacgacgagagaacaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaaccattacatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9586748 |
aaaagtaatgtacgacgagagaacaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaaccattacatcca |
9586847 |
T |
|
| Q |
101 |
acaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9586848 |
acaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaactt |
9586947 |
T |
|
| Q |
201 |
gacatcaagaacaaggtgatatc |
223 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
9586948 |
gacatcaagaataaggtgatatc |
9586970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 783484 - 783611
Alignment:
| Q |
96 |
atccaacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaac |
195 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| | |||||||||||||||| |||| ||||||| | || ||||||||||||| |||||||||||| |
|
|
| T |
783484 |
atccaacaatacatacataaaataaacaacataaacagaaattaatcatatatagtttgcagttgaaccgcatgcacaagtgacatagcatagcatcaac |
783583 |
T |
|
| Q |
196 |
aacttgacatcaagaacaaggtgatatc |
223 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
|
|
| T |
783584 |
atcttgacattaagaacaaggtgatatc |
783611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 1438371 - 1438248
Alignment:
| Q |
99 |
caacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaac |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||| ||||| ||||||| |||||||||||| | ||||||| | | ||||||||||||| | |
|
|
| T |
1438371 |
caacaatacatgca-aaaataaataacataaacataaattaaccatatttattttgcagttgaatctcatgctcaagtgatacagcatagcatcaacatc |
1438273 |
T |
|
| Q |
199 |
ttgacatcaagaacaaggtgatatc |
223 |
Q |
| |
|
||||||| || |||||||||||||| |
|
|
| T |
1438272 |
ttgacattaaaaacaaggtgatatc |
1438248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 37752585 - 37752618
Alignment:
| Q |
25 |
aaacaactcaaaccaacaaacaattgaaaataac |
58 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
37752585 |
aaacaactcaaaccaacaaataattgaaaataac |
37752618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 37757480 - 37757525
Alignment:
| Q |
176 |
tgacataacatagcatcaacaacttgacatcaagaacaaggtgata |
221 |
Q |
| |
|
|||||| |||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
37757480 |
tgacatgacatagcatctacaccttgacattaagaacaaggtgata |
37757525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 33038564 - 33038455
Alignment:
| Q |
114 |
aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca |
213 |
Q |
| |
|
|||| |||||| |||| |||||| || ||||||| | ||| |||| ||||||| ||||||||||| ||||||||| ||| | | |||| ||||||| |
|
|
| T |
33038564 |
aaaagaaataaaataaacaaaaataaaccatatatttgttgcagtttaatctcatgttcaagtgacatatcatagcatctacatcctaacattaagaaca |
33038465 |
T |
|
| Q |
214 |
aggtgatatc |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
33038464 |
aggtgatatc |
33038455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 33020683 - 33020575
Alignment:
| Q |
114 |
aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca |
213 |
Q |
| |
|
|||| ||||||||||| |||||| || ||||||| | ||| ||||||||| || ||||||||||| |||| |||| ||| | | |||| ||||||| |
|
|
| T |
33020683 |
aaaagaaataacataaacaaaaataaaacatatatttgttgcagttgaatcccaggttcaagtgacatatcataccatctacatcctaacattaagaaca |
33020584 |
T |
|
| Q |
214 |
aggtgatat |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
33020583 |
aggtgatat |
33020575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University