View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10654_low_4 (Length: 227)
Name: NF10654_low_4
Description: NF10654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10654_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 34725465 - 34725267
Alignment:
| Q |
11 |
gtgagatgaaatcacctttaaactcttttgatcaggatacgatatgccataaacactttgtaaactttttctatttttgnnnnnnntcctatatgctgaa |
110 |
Q |
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| T |
34725465 |
gtgaaatgaaatcacctttaaactcttttgatcaggatacgatatgccataaacactctgtaaactttttctatttttgccccccctccaatatgctgaa |
34725366 |
T |
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| Q |
111 |
gaagcctggaaatgcaaaaccaaaaaccaaagtgttcgcattgttacaagttttcagataaataaaactcaactaaaaatggtatcataaaacatatca |
209 |
Q |
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| T |
34725365 |
gaagcctggaaatgcaaaaccaaaaaccaaagtgttcgcattgttacaagttttcagataaataaaactcaactaaaaatggtatcataaaacatatca |
34725267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 15123601 - 15123466
Alignment:
| Q |
17 |
tgaaatcacctttaaactcttttgatcaggatacgatatgccataaacactttgtaaactttttctatttttgnnnnnnntcctatatgctgaagaagcc |
116 |
Q |
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| T |
15123601 |
tgaaattacctttaaactcttattgtcaggataagatataccataaactctttgtaaactttctctatctttgtcccccctccaatatgctgacgaagcc |
15123502 |
T |
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| Q |
117 |
tggaaatgcaaaaccaaaaaccaaagtgttcgcattg |
153 |
Q |
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| T |
15123501 |
tggaattgcaaaaccaaaaaac-aagtgtttgcattg |
15123466 |
T |
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