View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10655_low_2 (Length: 234)
Name: NF10655_low_2
Description: NF10655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10655_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 31938165 - 31938378
Alignment:
| Q |
12 |
aagcataggaaccagttcgaattagaaaccattcctactaacagactaatctggtacc--------caaagaccaagcgaaaatcatgttattgatccaa |
103 |
Q |
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| T |
31938165 |
aagcataggaaccagttcgaattagaaaccattcctactaacagactaatctggtacctttctcaccaaagaccaagcgaaaatcatgttattgatccaa |
31938264 |
T |
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| Q |
104 |
agaa--cacactaatcaacacaaccacaaaattttatcaattgcaagatgaatttctgcacacttaaaccttaattttaaactctatagcaattcagcct |
201 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
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| T |
31938265 |
agaattcacactaatcaacacaaccacaaaattttatcaattgcaagatgaatttctgcacacttaaacttgaattttaaactc--tagcaattcagcct |
31938362 |
T |
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| Q |
202 |
gttaatgcaaagcatg |
217 |
Q |
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|||||||||||||||| |
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| T |
31938363 |
gttaatgcaaagcatg |
31938378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 5638397 - 5638537
Alignment:
| Q |
73 |
agaccaagcgaaaatcatgttattgatccaaagaa--cacactaatcaacacaaccacaaaattttatcaattgcaagatgaatttctgcacacttaaac |
170 |
Q |
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| T |
5638397 |
agaccaagcgaaaataatgctaataatccaaagaattcacactaaacaagacagccacaaaattatatcaattgcaagatatattt-tcttgacttaaac |
5638495 |
T |
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| Q |
171 |
cttaattttaaactctatagcaattcagcctgttaatgcaaa |
212 |
Q |
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| T |
5638496 |
ctgaattttaaactctgcagcaactcaacttgttaaagcaaa |
5638537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 445808 - 445773
Alignment:
| Q |
12 |
aagcataggaaccagttcgaattagaaaccattcct |
47 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
445808 |
aagcataggaaccagtttgaattagaaaccattcct |
445773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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