View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10655_low_3 (Length: 231)
Name: NF10655_low_3
Description: NF10655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10655_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 30106372 - 30106567
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatatatgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttgac |
116 |
Q |
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| T |
30106372 |
aaaagcagtgtgcaacggttctgcacaatcacatatgataattcctaaaacatagagaagtttcctttatttgtggagctaaacattctggttagttgac |
30106471 |
T |
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| Q |
117 |
tgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30106472 |
tgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
30106567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 30111006 - 30111201
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatatatgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttgac |
116 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30111006 |
aaaagcagtgtgcaacggttctgcacaatcacatatgataattcctaaaacatagagaagtttcctttatttgtggagctaaacattctggttagttgac |
30111105 |
T |
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| Q |
117 |
tgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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| T |
30111106 |
tgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
30111201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 48641326 - 48641524
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatatatgataattcctaaaacatagagaagtt---tcctttatttgtggatttaaacattctggttagtt |
113 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
48641326 |
aaaagcaatgtgcaacggttctacacaatcacatatgataattcctaaaatatagagaagttgtttcctttatttgtggagctaaacattctggttagtt |
48641425 |
T |
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| Q |
114 |
gactgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
48641426 |
gactgatgtgagctgcaattacagctctttaatcctccaacgactctccaagtattgtgccattaataagagatttctttttgatacagtcttgtgttt |
48641524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 23871885 - 23871700
Alignment:
| Q |
29 |
caacggttctgcacaatcatatatgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttgactgatgtga--gc |
126 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |
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| T |
23871885 |
caacggttctgcacaatcacatatgataattcctaaaacatagagaagtttcctttatttgctgagctaaacattctggttagttgactgatgtgaatgc |
23871786 |
T |
|
| Q |
127 |
tgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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| T |
23871785 |
tgcaataacagctctttaatcctccaacggctcttcatgtattgtgccattaatatgaaatttctttttgctacagtcttgtgttt |
23871700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 3640768 - 3640955
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatatatgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttgac |
116 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
3640768 |
aaaagcaatgggcaacggttctgcacaatcacatatgataattcctaaagcatagagaagtttcctttatttgtggagctaaacattctg---------- |
3640857 |
T |
|
| Q |
117 |
tgatgtgagctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttttctt |
216 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3640858 |
--atgtgagctgcaattacagttctttaatcctgcaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttttctt |
3640955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 26689703 - 26689901
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatata-tgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttga |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| |||| |||||||||||||||| ||||||||||| ||||| || |||| ||||||||||||||| |
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| T |
26689703 |
aaaaacaatgtgcaactgttctgcacaatcacataatgattattcctaaaacatagacaagtttcctttgtttgttgagctaaagattctggttagttga |
26689802 |
T |
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| Q |
116 |
ctgatgtga--gctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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||||| ||| ||| |||||||| |||||||||| ||||||||||||||| ||| |||| |||||||||||||||||| |||||||| ||||| ||||| |
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| T |
26689803 |
ctgatttgaatgctccaattacaactctttaatcttccaacggctctccatgtaatgtgtcattaatatgagatttctctttgctacggtcttctgttt |
26689901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 26959434 - 26959632
Alignment:
| Q |
17 |
aaaagcaatgtgcaacggttctgcacaatcatata-tgataattcctaaaacatagagaagtttcctttatttgtggatttaaacattctggttagttga |
115 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||| |||| |||||||||||||||| ||||||||||| ||||| || |||| ||||||||||||||| |
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| T |
26959434 |
aaaaacaatgtgcaactgttctgcacaatcacataatgattattcctaaaacatagacaagtttcctttgtttgttgagctaaagattctggttagttga |
26959533 |
T |
|
| Q |
116 |
ctgatgtga--gctgcaattacagctctttaatcctccaacggctctccaagtattgtgccattaatatgagatttctttttgctacagtcttgtgttt |
212 |
Q |
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||||| ||| ||| |||||||| |||||||||| ||||||||||||||| ||| |||| |||||||||||||||||| |||||||| ||||| ||||| |
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| T |
26959534 |
ctgatttgaatgctccaattacaactctttaatcttccaacggctctccatgtaatgtgtcattaatatgagatttctctttgctacggtcttctgttt |
26959632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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