View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10655_low_4 (Length: 229)
Name: NF10655_low_4
Description: NF10655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10655_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2230958 - 2230739
Alignment:
| Q |
1 |
agagatagagggtagcatgcatgcatgcaaaaattagaaaatgttgaaacagaaaaaatgagctgagaatacgtgcatgatcctatgatgccggatacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
2230958 |
agagatagagggtagcatgcatgcatgcaaaaattagaaaatgttgaaacagaaaaaatgagctcagaatacatgcatgatcc---------ggatacaa |
2230868 |
T |
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| Q |
101 |
tgattacataatgtctacctttgcaattagattttggtttgttctcatcaagattttggtgtcaaaaataacccttttacaacaaaaatgttattggaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2230867 |
tgattacataatgtctacctttgcaattagattttagtttgttctcatcaagattttggtgtcaaaaataacccttttacaacaaaaatgttattggaac |
2230768 |
T |
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| Q |
201 |
acacttgacacaaatatggtaacagctac |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2230767 |
acacttgacacaaatatggtaacagctac |
2230739 |
T |
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