View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10656_high_2 (Length: 245)
Name: NF10656_high_2
Description: NF10656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10656_high_2 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 35677280 - 35677051
Alignment:
| Q |
16 |
catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat |
115 |
Q |
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| T |
35677280 |
catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat |
35677181 |
T |
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| Q |
116 |
gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccacc |
215 |
Q |
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| T |
35677180 |
gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccacc |
35677081 |
T |
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| Q |
216 |
ctgcatgttatatcattagtaactgtagaa |
245 |
Q |
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| T |
35677080 |
ctgcatgttatatcattagtaactgtagaa |
35677051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 35649200 - 35649043
Alignment:
| Q |
16 |
catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat |
115 |
Q |
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| T |
35649200 |
catcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtat |
35649101 |
T |
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| Q |
116 |
gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga |
173 |
Q |
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| T |
35649100 |
gtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga |
35649043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 35641862 - 35641635
Alignment:
| Q |
18 |
tcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgt |
117 |
Q |
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| T |
35641862 |
tcaataactttctcaaaaaattcatccaaatgtttagccactttttctgccttgctatagaaaccattaaccttacccaaccatttaagccaaggtatat |
35641763 |
T |
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| Q |
118 |
aatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactccaccttcatcacggtatcttttgcctagaaccaccct |
217 |
Q |
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| T |
35641762 |
aatctcctataaagaatgaacccaacaactctccaaactccaacatcagctccggcaataccccacctttttcaccatatctttttcctagagccaccct |
35641663 |
T |
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| Q |
218 |
gcatgttatatcattagtaactgtagaa |
245 |
Q |
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| T |
35641662 |
acatgttatatcattagtaattgtagaa |
35641635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 35656201 - 35656103
Alignment:
| Q |
30 |
tcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctata |
128 |
Q |
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| T |
35656201 |
tcaaaaaattcatccaattgtttggccactttttctgctttgctataaaaaccattaacttttcccaaccaatcaagccaaggtatatagtctcctata |
35656103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 35646750 - 35646647
Alignment:
| Q |
59 |
tttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactcc |
158 |
Q |
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| T |
35646750 |
tttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactcc |
35646651 |
T |
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| Q |
159 |
aaca |
162 |
Q |
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|||| |
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| T |
35646650 |
aaca |
35646647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 35656039 - 35655984
Alignment:
| Q |
189 |
tcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtaga |
244 |
Q |
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| T |
35656039 |
tcacggtatctttttcccagagccaccctgcatactatatcattagtaattgtaga |
35655984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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