View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10656_high_3 (Length: 226)
Name: NF10656_high_3
Description: NF10656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10656_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 44653401 - 44653207
Alignment:
| Q |
13 |
cataggtcattttcgttcagaatcacttcctaacgacataattttccacataatcacgcttagtggtttttctgctaattttctctactattaaattctt |
112 |
Q |
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| T |
44653401 |
cataggtcattttcattcagaatc-----ctaacgacataattttccacataatcacgcttagtggtttttttgctaattttctctactattaaactctt |
44653307 |
T |
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| Q |
113 |
gccatttgttgcaaggatctttattttagtccctttggttgtgttattctttaggttctatatgtggttgctttgtagtgttggattggttattgttagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| |
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| T |
44653306 |
gccatttgttgcaaggatctttattttagtccctttggttgtgttattctttaggtgctatatgtggttgctttgtggtcttggattggttattgttagt |
44653207 |
T |
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