View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10656_low_10 (Length: 209)
Name: NF10656_low_10
Description: NF10656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10656_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 50568005 - 50568194
Alignment:
| Q |
19 |
caaatcacaaacataagaacatattcaataggttcgtcaaatcaaatatagaaaaccttccaatttaaagaaaatcatttataaaattactgaatgaaaa |
118 |
Q |
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| T |
50568005 |
caaatcacaaacataagaacatattcaataggttcgtcaaatcaaatatagaaaaccttccaatttaaagaaaatcatttataaaattactgaatgaaaa |
50568104 |
T |
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| Q |
119 |
ataaatgacattttgaaagaccaaatggaaaagctaaccttgttactgcaattttcattcggaacagaaacccgccacttcagatctctg |
208 |
Q |
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| T |
50568105 |
ataaatgacattttgaaagaccaaatggaaaagctaaccttgttactgcaattttcattcggaacagaaacccgccacttcagatctctg |
50568194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 50557896 - 50558043
Alignment:
| Q |
66 |
atagaaaaccttccaatttaaagaaaatcatttataaaattactgaatg-aaaaataaatgacattttgaaagacc-----aaatggaaaagctaacctt |
159 |
Q |
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| T |
50557896 |
atagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaacctt |
50557995 |
T |
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| Q |
160 |
gttactgcaattttcattcggaacagaaacccgccacttcagatctct |
207 |
Q |
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| T |
50557996 |
attactatatttttcatgtggaacaggaaccccccacttcagatctct |
50558043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 29770210 - 29770361
Alignment:
| Q |
55 |
tcaaatcaaatatagaaaaccttccaatttaaagaaaatcatttataaaattactgaatgaaaaataaatgacattttgaaagaccaaatggaaaagcta |
154 |
Q |
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| T |
29770210 |
tcaaaccaaacatagaacaccttccaatttaaagaatgtagttta--aaattagtgaatgaaaaacaaccgacattttgaaagacccaaagggaaaactt |
29770307 |
T |
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| Q |
155 |
accttgttactgcaattttcattcggaacagaaacccgccacttcagatctctg |
208 |
Q |
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| T |
29770308 |
accttgtcactgtatttttcatgtggaacaggaaccccccacttcagatctctg |
29770361 |
T |
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