View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10656_low_7 (Length: 238)
Name: NF10656_low_7
Description: NF10656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10656_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 4816232 - 4816450
Alignment:
| Q |
3 |
agaagaagaactttgatggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacact |
102 |
Q |
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| T |
4816232 |
agaagaagaactttgatggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacact |
4816331 |
T |
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| Q |
103 |
ttgataaacatctgactcagttttgtcttcttttaaagtaacaacactccacaagttcaatagtacttttgtccttggtgagttgaaagaagacatgttg |
202 |
Q |
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| T |
4816332 |
ttgataaacatctaactcagttttgtcttcttttaaagtaacaacactccacaagttcaatagtacttttgtccttggtgagttgaaagaagacatgttg |
4816431 |
T |
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| Q |
203 |
cagcaatgaacaaatcttt |
221 |
Q |
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| T |
4816432 |
cagcaatgaacaaatcttt |
4816450 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 19622591 - 19622502
Alignment:
| Q |
41 |
agtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacactttgataaacatctgactcagttttgtct |
130 |
Q |
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| T |
19622591 |
agtattcatcaagttttaaagacgaagctctgatctgaagaatcaaatcaatggttaacgctttgatgaacatctgaccaagttttgtct |
19622502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 9597108 - 9597060
Alignment:
| Q |
92 |
tggtcaacactttgataaacatctgactcagttttgtcttcttttaaag |
140 |
Q |
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| T |
9597108 |
tggtcaacactatgatgaacatctgaccgacttttgtcttcttttaaag |
9597060 |
T |
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