View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10657_high_1 (Length: 365)
Name: NF10657_high_1
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 5066299 - 5065939
Alignment:
| Q |
1 |
ccacctccctttctcttctaaccctttataaaccttaccatattatctaattttcctaacaactcattcatctaaacctccttcttcattcttctctcaa |
100 |
Q |
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| T |
5066299 |
ccacctccctttctcttctaaccctttataaaccttaccatattatctaattttcctaacaactcattcatctaaacctccttcttcattcttctctcaa |
5066200 |
T |
|
| Q |
101 |
ctatcaaaaaatgggtcttaatgatcaagattctcttcaccttgttctaggtttatctttgaatacttctactactccaaaggaaataactaccaccacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066199 |
ctatcaaaaaatgggtcttaatgatcaagattctcttcaccttgttctaggtttatctttgaatacttctactactccaaaggaaataactaccaccacc |
5066100 |
T |
|
| Q |
201 |
cccatgaatccctattccacctccaacgagccatccttaacgttaggactctctggtgagagttataaccttataagtcacaaacaagctaccaaaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066099 |
cccatgaatccctattccacctccaacgagccatccttaacgttaggactctctggtgagagttataaccttataagtcacaaacaagctaccaaaggtt |
5066000 |
T |
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| Q |
301 |
atggtgaggaactttgtagacaaacttcatcacctcatagtgttgttaattcatctctctc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5065999 |
atggtgaggaactttgtagacaaacttcatcacctcatagtgttgttaattcatctttctc |
5065939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 33173314 - 33173259
Alignment:
| Q |
282 |
aaacaagctaccaaaggttatggtgaggaactttgtagacaaacttcatcacctca |
337 |
Q |
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||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
33173314 |
aaacaagctctcaaagcttatggtgatgaactttgtagacaaaattcatcacctca |
33173259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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