View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10657_low_1 (Length: 422)
Name: NF10657_low_1
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 8371923 - 8372044
Alignment:
| Q |
286 |
ccctcttttttacattcttcgttcctttcttctcaatttccatttgtgcaaccgaagctcattcgcaaaatcaaagtgattgggttgtgattcgtctttg |
385 |
Q |
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| T |
8371923 |
ccctattttttacattcttcgttcctttcttctcaatttccatttgtgcaactgaagctcatttgcaaaatcaaagtgattgggttgcgattcgtctttg |
8372022 |
T |
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| Q |
386 |
atttttgattttggtttcttct |
407 |
Q |
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| T |
8372023 |
atttttgattttggtttcttct |
8372044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 8371752 - 8371864
Alignment:
| Q |
114 |
gtctcattctcttctattctttcccacacaaataaacacagattcccacccttttctttttccagaaccattttaatacgattaatttatttttaaacac |
213 |
Q |
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| T |
8371752 |
gtctcattctcttctattcttttccacacaaataaacacagattcccacccctttctttttccagaaccattttaatacg-ttaatttatttttaaacac |
8371850 |
T |
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| Q |
214 |
aaacatcattcaac |
227 |
Q |
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| T |
8371851 |
aaacatcattcaac |
8371864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 8371642 - 8371726
Alignment:
| Q |
1 |
taatttatttatttcaatcatgaaacccaattgcaacacttatccccattccatcaattttatttcttcacccctttcttgtttc |
85 |
Q |
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| T |
8371642 |
taatttatttatttcaatcatgaaatccaattgcaacacttatccccattccatcaattttatttcttcacccctttcttgtttc |
8371726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 45048345 - 45048463
Alignment:
| Q |
286 |
ccctcttttttacattcttcgttcctttcttctcaatttccatttgtgcaaccgaagctcattcgcaaaatcaaagtgattgggttgtgattcgtctttg |
385 |
Q |
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| T |
45048345 |
ccctttttttcaccttcttcgttcctttcttctcaatttccattcctgcaactgaagctcattcacaaaatcaaagtgattgggttgtgatttgtcttcg |
45048444 |
T |
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| Q |
386 |
atttttgattttggtttct |
404 |
Q |
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| T |
45048445 |
cttttttattctggtttct |
45048463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45047875 - 45047963
Alignment:
| Q |
1 |
taatttatttatttcaatcatgaaacccaattgcaacacttatccc-----cattccatcaattttatttcttcacccctttcttgttt |
84 |
Q |
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| T |
45047875 |
taatttatttacttccatcatgagactcaattgcaacacttatccctaatatattccatcaattttattccttcaccactttcttgttt |
45047963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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