View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10657_low_2 (Length: 367)
Name: NF10657_low_2
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 4332942 - 4332594
Alignment:
| Q |
1 |
acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4332942 |
acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt |
4332843 |
T |
|
| Q |
101 |
caaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggtt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4332842 |
caaaagattttgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggtt |
4332743 |
T |
|
| Q |
201 |
ctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4332742 |
ctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggattg |
4332643 |
T |
|
| Q |
301 |
cttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4332642 |
cttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatc |
4332594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 4323642 - 4323925
Alignment:
| Q |
1 |
acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt |
100 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||| ||| ||||||| | | |||||||| | | |||| ||| ||| | | | ||| |||||| |
|
|
| T |
4323642 |
acctggaatttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctgtt |
4323741 |
T |
|
| Q |
101 |
caaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggtt |
200 |
Q |
| |
|
||| |||||| |||| | ||||||||| ||||| |||||| ||||||||| || |||| ||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
4323742 |
caatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggcagtacaacctggcctgtggtt |
4323841 |
T |
|
| Q |
201 |
ctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaatt |
284 |
Q |
| |
|
|| || | |||| |||||| |||||||||||||||||| | ||||| ||||||||||| |||||||| | |||||||||| |
|
|
| T |
4323842 |
ctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgagaagactataacagaaatt |
4323925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4350509 - 4350370
Alignment:
| Q |
1 |
acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
4350509 |
acctggaattcaggacaacaaatcctgcaaggccagcagcatcacgaagtgcgtctctccactttggtaccatgaattcatctccttttaaaactttgtt |
4350410 |
T |
|
| Q |
101 |
caaaagatttcgaaaagctttaccaaagtcacctgtttga |
140 |
Q |
| |
|
||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
4350409 |
caatgctttttgaaaagcttcaccaaactcacctgtttga |
4350370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 4356951 - 4356760
Alignment:
| Q |
95 |
tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtctt |
194 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||| ||||||| ||||||||| || || | ||||| |||||||| ||||||||||| || | | |
|
|
| T |
4356951 |
tctgttcaaaagattttgaaatgatttaccaaagtcaccggtttgacgacgaacttcggaagggtcaacatcatagaacactggcagtaccacttggcct |
4356852 |
T |
|
| Q |
195 |
gtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattct |
286 |
Q |
| |
|
| || || ||||| ||| ||||| | ||||||| | ||||||||| ||||||||| ||||||||||||||||| | ||||| |||||| |
|
|
| T |
4356851 |
atagtactgtaacacgacattatttgaaccaactctcgcagacaccatgacgaatcagcatagtttttggagaagacgataacagcaattct |
4356760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 4129500 - 4129649
Alignment:
| Q |
137 |
ttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggttctaaaacactccataatttgcatcaactcttgaaga |
236 |
Q |
| |
|
||||| |||||| || || |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||| || | | |
|
|
| T |
4129500 |
ttgacgacgaacatcagacggataaacatcgtagaacacaggcagtaccacctgtccagtggttctgtaacactccagtatttgaatcaactcctgcata |
4129599 |
T |
|
| Q |
237 |
caccattgcgaatcagcgtagtttttggagaagacaacaacagaaattct |
286 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||| || ||||||||| |
|
|
| T |
4129600 |
caccacggtgaatccgcgtagtttttggagaatacaataatagaaattct |
4129649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 5422401 - 5422244
Alignment:
| Q |
99 |
ttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtgg |
198 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| ||||| ||||||| ||| ||||| || |||| ||| ||| ||||||| ||||| || | |||| ||| |
|
|
| T |
5422401 |
ttcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttgtccaatgg |
5422302 |
T |
|
| Q |
199 |
ttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgta |
256 |
Q |
| |
|
|||| ||||||||| |||| || |||||| | |||||||||||| ||||| ||||| |
|
|
| T |
5422301 |
ttctgtgacactccattattttcaacaactcatcaagacaccattgtgaatccgcgta |
5422244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 5340756 - 5340679
Alignment:
| Q |
95 |
tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaa |
172 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| || ||||||||| ||| | ||| ||||||| ||||||||||| |
|
|
| T |
5340756 |
tctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa |
5340679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 5358165 - 5358290
Alignment:
| Q |
224 |
caactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggattgcttgtagtagtgttttagagatg |
323 |
Q |
| |
|
|||||||| ||||||||||||||| || || || ||| | ||||| || | |||||||||| || || || |||||||| | ||||| ||| || ||| |
|
|
| T |
5358165 |
caactcttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaatttgagaatcttgaattgcttgcattagtgattttgaaatg |
5358264 |
T |
|
| Q |
324 |
cgatgtcccctttgaagggaatgatc |
349 |
Q |
| |
|
||| |||||||||||| |||||||| |
|
|
| T |
5358265 |
tgatctcccctttgaagtgaatgatc |
5358290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University