View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10657_low_4 (Length: 315)
Name: NF10657_low_4
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 40161703 - 40161413
Alignment:
| Q |
18 |
attaacactgatccaatcaaaagtttaccatctttctcatccgcttcactaacatatctcatggtcttcccttccacaatttctaatatttccccttcat |
117 |
Q |
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| T |
40161703 |
attaacactgatccaatcaaaagtttaccatctttctcatccgcttcactaacatatctcatggtcttcccttccacaatttctaatatttccccttcat |
40161604 |
T |
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| Q |
118 |
cactcaactttatagctgcattatgcaaagcaacccaaaactgaccatctgaatttctccttatattgtccggataacctggaagaacggcaaatgtatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40161603 |
cactcaactttatagctgcattatgcaaagcaacccaaaactgcccatctgaatttctccttatattgtccggataacctggaagaacggcaaaagtatt |
40161504 |
T |
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| Q |
218 |
gacttgaccagcattagggccatgaagccaaagtcgaagaatccggaaagtcgaggtttcccctactagaaggaataaaccgtctctgctt |
308 |
Q |
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| T |
40161503 |
gacttgaccagcattagggccatgaagccaaagtcgaagaatccggaaagtcgaggtttcacctactagaaggaataaaccgtctttgctt |
40161413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 308
Target Start/End: Complemental strand, 35491117 - 35490906
Alignment:
| Q |
97 |
tttctaatatttccccttcatcactcaactttatagctgcattatgcaaagcaacccaaaactgaccatctgaatttctccttatattgtccggataacc |
196 |
Q |
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| T |
35491117 |
tttctaatatttctccttcatcactcagctttacagctgatgaatacaaagcaacccaaaactgaccatatgaatttctccttatattgtcgggaaaacc |
35491018 |
T |
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| Q |
197 |
tggaagaacggcaaatgtattgacttgaccagcattagggccatgaagccaaagtcgaagaatccggaaagtcgaggtttcccctactagaaggaataaa |
296 |
Q |
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| T |
35491017 |
tggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagccgaagaattctgcaatttgaggtttcagctaccagaagaaatgaa |
35490918 |
T |
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| Q |
297 |
ccgtctctgctt |
308 |
Q |
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|| ||| ||||| |
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| T |
35490917 |
ccatctttgctt |
35490906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 308
Target Start/End: Complemental strand, 35512541 - 35512373
Alignment:
| Q |
140 |
atgcaaagcaacccaaaactgaccatctgaatttctccttatattgtccggataacctggaagaacggcaaatgtattgacttgaccagcattagggcca |
239 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||||||||||| ||||| |||| || ||| ||| ||||||| ||| |
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| T |
35512541 |
atgcaaagcaacccaaaagtgcccttctgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggccaacattaggtcca |
35512442 |
T |
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| Q |
240 |
tgaagccaaagtcgaagaatccggaaagtcgaggtttcccctactagaaggaataaaccgtctctgctt |
308 |
Q |
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| T |
35512441 |
ttaagccaaagcctcagaatcctgctaatcgaggtttcggctaccagaagaaatgaaccatctttgctt |
35512373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 140 - 308
Target Start/End: Complemental strand, 35503909 - 35503741
Alignment:
| Q |
140 |
atgcaaagcaacccaaaactgaccatctgaatttctccttatattgtccggataacctggaagaacggcaaatgtattgacttgaccagcattagggcca |
239 |
Q |
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|||||||||||||||||| || || |||||||||||||||| |||||| ||| | ||||||||||| ||||| |||| |||||| |||||||| || ||| |
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| T |
35503909 |
atgcaaagcaacccaaaattgcccttctgaatttctccttacattgtctggaaagcctggaagaacagcaaaagtatcgacttggccagcatttggtcca |
35503810 |
T |
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| Q |
240 |
tgaagccaaagtcgaagaatccggaaagtcgaggtttcccctactagaaggaataaaccgtctctgctt |
308 |
Q |
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|||||||||| | |||||| | ||||||| ||||| |||| ||||| ||| |||| ||| ||||| |
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| T |
35503809 |
cgaagccaaagcctcagaatcttgcaagtcgaagtttcagctaccagaagaaatgaaccatctttgctt |
35503741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 35504065 - 35504026
Alignment:
| Q |
98 |
ttctaatatttccccttcatcactcaactttatagctgca |
137 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
35504065 |
ttctaatatttccccttcatcactcagctttatagctgca |
35504026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 35512707 - 35512658
Alignment:
| Q |
88 |
cttccacaatttctaatatttccccttcatcactcaactttatagctgca |
137 |
Q |
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|||||| | |||||| |||||||||||||||||||| ||||||||||||| |
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| T |
35512707 |
cttccagactttctattatttccccttcatcactcagctttatagctgca |
35512658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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