View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10657_low_7 (Length: 239)
Name: NF10657_low_7
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 221340 - 221558
Alignment:
| Q |
1 |
tataagcaatataaaacagaatacataagtgcctattacattacttgttggtgcaatgcattgaaattatcaaataccaaaacatcaaagtagagaggat |
100 |
Q |
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| T |
221340 |
tataagcaatataaaacagaataca-aagtgcctattacattacttgttggtgcaatgcattgaaattatcaaataccaaaacatcaaagtagagaggat |
221438 |
T |
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| Q |
101 |
acataagttgttaatcgccatagtcagccgcacgaaacatcgtgacttttagcaccaacggattattcttgatcagctcaaacacacaataatctccatg |
200 |
Q |
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| T |
221439 |
acataagttgttaatcgccatagtcagccgcacgaaacattgtgacttttagcaccaacggattattcttgatcagctcaaacacacaataatctccatg |
221538 |
T |
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| Q |
201 |
tgacagattattgtcccttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
221539 |
tgacagattattgtcccttt |
221558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 196601 - 196696
Alignment:
| Q |
120 |
atagtcagccgcacgaaacatcgtgacttttagcaccaacggattattcttgatcagctcaaacacacaataatctccatgtgacagattattgtc |
215 |
Q |
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| T |
196601 |
atagtcaaccgcacgaaacattgtgacttctagcacaaccggcttcttcttgatgagctcatacacacaataatctcgatgtgacagattgttgtc |
196696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 216473 - 216609
Alignment:
| Q |
83 |
catcaaagtagagaggatacataagttgttaatcgccatagtcagccgcacgaaacatcgtgacttttagcaccaacggattattcttgatcagctcaaa |
182 |
Q |
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| T |
216473 |
catcaaagtggagaggatcgataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaa |
216572 |
T |
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| Q |
183 |
cacacaataatctccatgtgacagattattgtccctt |
219 |
Q |
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| T |
216573 |
cacacaataatctccatgagacagattgttgcccctt |
216609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 206405 - 206460
Alignment:
| Q |
100 |
tacataagttgttaatcgccatagtcagccgcacgaaacatcgtgacttttagcac |
155 |
Q |
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| T |
206405 |
tacatgagttgttaatcgcaatagtcaaccacatgaaacatcgtgacttctagcac |
206460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 206319 - 206351
Alignment:
| Q |
51 |
gtgcaatgcattgaaattatcaaataccaaaac |
83 |
Q |
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| T |
206319 |
gtgcaatgcatggaaattatcaaataccaaaac |
206351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 209746 - 209778
Alignment:
| Q |
51 |
gtgcaatgcattgaaattatcaaataccaaaac |
83 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
209746 |
gtgcaatgcatggaaattatcaaataccaaaac |
209778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 29837752 - 29837861
Alignment:
| Q |
107 |
gttgttaatcgccatagtcagccgcacgaaacatcgtgacttttagcaccaacggattattcttgatcagctcaaacacacaataatctccatgtgacag |
206 |
Q |
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|||||||||||| ||||||| ||||||||||| |||||||||||||| | ||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29837752 |
gttgttaatcgcaatagtcaatagcacgaaacattgtgacttttagcacaaccggttttgtcttgatcagctcaaacacacaataatctccatacgacag |
29837851 |
T |
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| Q |
207 |
attattgtcc |
216 |
Q |
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|| |||||| |
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| T |
29837852 |
gttgttgtcc |
29837861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 6901929 - 6901880
Alignment:
| Q |
106 |
agttgttaatcgccatagtcagccgcacgaaacatcgtgacttttagcac |
155 |
Q |
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||||||||||||| ||||||| || |||||||||||||||||| |||||| |
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| T |
6901929 |
agttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcac |
6901880 |
T |
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