View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10657_low_9 (Length: 228)
Name: NF10657_low_9
Description: NF10657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10657_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 14727476 - 14727676
Alignment:
| Q |
1 |
attgttggtaagtactggtatcaatttggaggaaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattatta |
100 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727476 |
attgttggtaagtactggtataaatttgaaggaaaagaatttggagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattatta |
14727575 |
T |
|
| Q |
101 |
agtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacatacatagtttgaggttaatggccacaaccaaaactatgagtaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14727576 |
agtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgc----acataggttgaggttaatggccacaaccaaaactatgagtaataaa |
14727671 |
T |
|
| Q |
201 |
ttggt |
205 |
Q |
| |
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||||| |
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| T |
14727672 |
ttggt |
14727676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 30648613 - 30648757
Alignment:
| Q |
1 |
attgttggtaagtactggtatcaatttggaggaaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattatta |
100 |
Q |
| |
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||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
30648613 |
attgttggtaagtactggtatagatttgaaggcaaagaatagtgagaacaaaaccgcattagacatagcaagcacgccagagatcaagagtatattatta |
30648712 |
T |
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| Q |
101 |
agtgttggagcaaaacatagcatagaagtcgctgatgctcccaca |
145 |
Q |
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||||||||| |||||| |||| ||||||| ||||| ||||||| |
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| T |
30648713 |
agtgttggaacaaaacctagctcagaagtcactgattatcccaca |
30648757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 26089009 - 26089120
Alignment:
| Q |
34 |
aaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgct |
133 |
Q |
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||||||| | ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||| || || |
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| T |
26089009 |
aaagaatctggagaacaaaaccgcattagacatagcaagcactccagatgtgaagagtatattattaagttttggagcaaaacctagcatagaaatcact |
26089108 |
T |
|
| Q |
134 |
gatgctcccaca |
145 |
Q |
| |
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|||||||||||| |
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| T |
26089109 |
gatgctcccaca |
26089120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 28865709 - 28865830
Alignment:
| Q |
33 |
aaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgc |
132 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||| |||| |||| |||||| ||| |||||||| | |
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| T |
28865709 |
aaaagaatttggagaataaaacagcattggacatagcaagcattccagagattaagagtatattattcagtgctggatcaaaaccaagcttagaagtcac |
28865808 |
T |
|
| Q |
133 |
tgatgctcccacacgtgcacat |
154 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
28865809 |
agatgctcccacacgtgcacat |
28865830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 15329612 - 15329721
Alignment:
| Q |
33 |
aaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgc |
132 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||| |||| ||| |||||| ||| |||||||| | |
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| T |
15329612 |
aaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctgggtcaaaaccaagcttagaagtcac |
15329711 |
T |
|
| Q |
133 |
tgatgctccc |
142 |
Q |
| |
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||||||||| |
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|
| T |
15329712 |
agatgctccc |
15329721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 15509981 - 15510090
Alignment:
| Q |
33 |
aaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgc |
132 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||| |||| ||| |||||| ||| |||||||| | |
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| T |
15509981 |
aaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctgggtcaaaaccaagcttagaagtcac |
15510080 |
T |
|
| Q |
133 |
tgatgctccc |
142 |
Q |
| |
|
||||||||| |
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| T |
15510081 |
agatgctccc |
15510090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 26086773 - 26086619
Alignment:
| Q |
1 |
attgttggtaagtactggtatcaatttggaggaaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattatta |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| |
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| T |
26086773 |
attgttgctaagtactggtataaatttcgaggcaaagaatttggagaacaaaacagcattagacatagcaagcactccaaagatcaagagtatattatta |
26086674 |
T |
|
| Q |
101 |
agtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
155 |
Q |
| |
|
|| | ||||||||| |||||| |||||||||||||||||||||| |||||||| |
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|
| T |
26086673 |
agggcaggagcaaaatctagcatggaagtcgctgatgctcccacacttgcacata |
26086619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17292992 - 17292838
Alignment:
| Q |
1 |
attgttggtaagtactggtatcaatttggaggaaaagaatttcgagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattatta |
100 |
Q |
| |
|
|||||||||||||||||| || |||||| ||| |||||||| ||||||||||||||||||||||| | ||| | ||||| |||||||| ||||| |
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|
| T |
17292992 |
attgttggtaagtactgggataaatttgaaggcgaagaatttggagaacaaaacagcattagacattgccgccactctagagaacaagagtatcttattt |
17292893 |
T |
|
| Q |
101 |
agtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
155 |
Q |
| |
|
|||| |||| |||||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
17292892 |
agtgctggatcaaaacctagcttagaagtcatggatgctcccacacttgcacata |
17292838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 6611181 - 6611070
Alignment:
| Q |
44 |
gagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctccca |
143 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||| ||| |||||||| ||||| || ||||||||||||| |||| |||||||| || || ||||| |
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|
| T |
6611181 |
gagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcagagttggagcaaaacctagcttagaagtcactcataatccca |
6611082 |
T |
|
| Q |
144 |
cacgtgcacata |
155 |
Q |
| |
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||| |||||||| |
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|
| T |
6611081 |
cacttgcacata |
6611070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 4819716 - 4819792
Alignment:
| Q |
79 |
agagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgatgctcccacacgtgcacata |
155 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| | || | |||||| | |||| ||||||| |||||||| |
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|
| T |
4819716 |
agagatcaagagtatattatcaagtgttggagcaaaacctggcttggaagtcaccaatgcacccacacttgcacata |
4819792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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