View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_high_12 (Length: 238)
Name: NF10658_high_12
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 27779872 - 27779664
Alignment:
| Q |
14 |
agatacaataaatggtttaaaatgaggatagcaatcaatgagatctttgaaaaggaaagatatcataaaatgaaaagtaattaatcaaatacctttgcaa |
113 |
Q |
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| T |
27779872 |
agatacaataaatggtttaaaatgaggatagcaatcaatgagatctttggaaaacaaagatatcataaaatgaaaagtaattaatcaaatacctttgcaa |
27779773 |
T |
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| Q |
114 |
caaacggcggtttggttcaggaaaagtgtcacatattgctgtacgcatagcagaaaccctattctcacgtgcagttcctaaaagatgtgatagattcaaa |
213 |
Q |
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| T |
27779772 |
caaacggcggtttggttcaggaaaagtgtcacatattgctgtacgcatagcagaaaccctattctcacgtgcagttcctaaaatatgtgataggttcaaa |
27779673 |
T |
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| Q |
214 |
tgatgaatg |
222 |
Q |
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||||||||| |
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| T |
27779672 |
tgatgaatg |
27779664 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 46261987 - 46262060
Alignment:
| Q |
101 |
aatacctttgcaacaaacggcggtttggttcaggaaaagtgtcacatattgctgtacgcatagcagaaacccta |
174 |
Q |
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||||||||||||| || ||||| ||||||||||| ||||||||| |||||||| |||||||| || ||||||| |
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| T |
46261987 |
aatacctttgcaataagcggcgatttggttcagggaaagtgtcatttattgctgcacgcatagaagcaacccta |
46262060 |
T |
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