View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10658_high_13 (Length: 238)
Name: NF10658_high_13
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10209176 - 10209399
Alignment:
| Q |
1 |
cacaaaaacctttgttcactcatttccaacccataagcaatttcatctgtttgagcactagtaaggatcccctcactaccaaaattcacatatattacac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10209176 |
cacaaaaatctttgttcactcatttccaacccataagcaatttcatctgtttgagcactagtaaggatcccctcactaccaaaattcacatatattacac |
10209275 |
T |
|
| Q |
101 |
ttccacgtggctgctcatccaaccattggaaacacatatcaaattcagatccgttattaatagagtcttcattcactaacggtccaaccggataaaccgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10209276 |
ttccacgtggctgctcatccaaccattggaaacacatatcaaattcagatccattattaatagagtcttcattcactaacggtccaaccggataaaccgg |
10209375 |
T |
|
| Q |
201 |
cggttcattcttttgcaaaaaagt |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10209376 |
tggttcattcttttgcaaaaaagt |
10209399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10202103 - 10202326
Alignment:
| Q |
1 |
cacaaaaacctttgttcactcatttccaacccataagcaatttcatctgtttgagcactagtaaggatcccctcactaccaaaattcacatatattacac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10202103 |
cacaagaacctttgttcactcatttccaacccataagcaatttcatctgtttgagcactagtaaggatcccctcactaccaaaattcacaaatataacac |
10202202 |
T |
|
| Q |
101 |
ttccacgtggctgctcatccaaccattggaaacacatatcaaattcagatccgttattaatagagtcttcattcactaacggtccaaccggataaaccgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
10202203 |
ttccacgtggctgctcatccaaccattgaaaacacacatcaaattcagatccattattaatagagtcttcattcaccaacggtccaaccggataaactgg |
10202302 |
T |
|
| Q |
201 |
cggttcattcttttgcaaaaaagt |
224 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
10202303 |
cggttcattctttttcaaaaaagt |
10202326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University