View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_high_15 (Length: 227)
Name: NF10658_high_15
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_high_15 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 30625 - 30427
Alignment:
| Q |
1 |
aaaaacactaatgactattttacagccgaccctgagagaactttgtcgttaaactcttatcac--taagctaacacctttatggcgttatgtaattcaat |
98 |
Q |
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| T |
30625 |
aaaaacactaatgactattttacaatcgaccctgagagaactttatctcttgagg-ttatgacgttaagctaacacctt-atggcattatgtaattcaat |
30528 |
T |
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| Q |
99 |
ggaagctaattagagatgataagataagaaaaaattacataattagaaagcgctatttgtgaaggcgaaaccatttccactatcaaagtgactattgttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||| |
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| T |
30527 |
ggaagctaattagagatgataagataagaaaaaagtacataattagaaagcgctatttgtgaaggtgaaatcatttccactatgaaagtgactgttgttt |
30428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 65704 - 65635
Alignment:
| Q |
152 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65704 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
65635 |
T |
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