View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_high_2 (Length: 352)
Name: NF10658_high_2
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 23972119 - 23972465
Alignment:
| Q |
1 |
acatcaaaaattaaaacaaacaaatgaagtggaggagttaataaaggttccatcta-atgaaatgatctggaactaacaaaagaacacgattttggatct |
99 |
Q |
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| T |
23972119 |
acatcaaaaattaaaacaaacaaatgaagtggaagagttaataaaggttccatctttatgaaatgatctggaactaacaaaagaacacgattttggatct |
23972218 |
T |
|
| Q |
100 |
taaaaatctagcaacatacacacaaacaaaacagagagtttaagtgaatctaaacacatcaaaactttctaaatataccttctaatttgtattgctttac |
199 |
Q |
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| T |
23972219 |
taaaaatctagcaacatacacacaaa-aaaacagagagtctaagtgaatctaaacacatcaaaactttctaaatataccttctaatttgtattgctttac |
23972317 |
T |
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| Q |
200 |
tctattctatctctgattgtaaaagggtgggttagtaccatcctaatttgatttattttatggttgctatagtgctaggctggctgtcttcgttaaccaa |
299 |
Q |
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| T |
23972318 |
tctattctatctctgattgtaaaagggtgggttagtaccatcctaatttgatttattttctggttgctatagtgctaggctggctgtcttcgttaaccaa |
23972417 |
T |
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| Q |
300 |
actgtttgattaaaatggctagtcatgtatattattattcttctctct |
347 |
Q |
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| T |
23972418 |
actatttgattaaaatggctaggcatgtatattattattcttttctct |
23972465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 46404778 - 46404886
Alignment:
| Q |
238 |
catcctaatttgatttattttatggttgctatagtgctaggctggctgtcttcgttaaccaaactgtttgattaaaatggctagtcatgtatattattat |
337 |
Q |
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| T |
46404778 |
catccaaatttcatttattttctggttgctatagtgctaggctggctgtcttcaat-atttaattgtttgattaaaatggctaggcatgtatattattat |
46404876 |
T |
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| Q |
338 |
tcttctctct |
347 |
Q |
| |
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|||| ||||| |
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| T |
46404877 |
tcttttctct |
46404886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 33538271 - 33538203
Alignment:
| Q |
273 |
gctaggctggctgtcttcgttaaccaaactgtttgattaaaatggctagtcatgtatattattattctt |
341 |
Q |
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|||||||||| | | || ||||||||||| |||||||||| |||||||| |||||| |||||||||||| |
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| T |
33538271 |
gctaggctggttttttttgttaaccaaaccgtttgattaagatggctaggcatgtagattattattctt |
33538203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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