View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10658_high_4 (Length: 275)
Name: NF10658_high_4
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_high_4 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 3939 - 4148
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3939 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
4038 |
T |
|
| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
4138 |
T |
|
| Q |
247 |
aggttccaaa |
256 |
Q |
| |
|
|||||||||| |
|
|
| T |
4139 |
aggttccaaa |
4148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 11595 - 11804
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11595 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
11694 |
T |
|
| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11695 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
11794 |
T |
|
| Q |
247 |
aggttccaaa |
256 |
Q |
| |
|
|||||||||| |
|
|
| T |
11795 |
aggttccaaa |
11804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3893 - 3922
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3893 |
aaaagcaaccagttctaacggacaacatac |
3922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11549 - 11578
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11549 |
aaaagcaaccagttctaacggacaacatac |
11578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 6509915 - 6510124
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6509915 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
6510014 |
T |
|
| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510015 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
6510114 |
T |
|
| Q |
247 |
aggttccaaa |
256 |
Q |
| |
|
|||||||||| |
|
|
| T |
6510115 |
aggttccaaa |
6510124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6509869 - 6509898
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6509869 |
aaaagcaaccagttctaacggacaacatac |
6509898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University