View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_high_9 (Length: 241)

Name: NF10658_high_9
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_high_9
NF10658_high_9
[»] chr4 (13 HSPs)
chr4 (11-223)||(7006183-7006402)
chr4 (11-219)||(7008033-7008248)
chr4 (141-219)||(7042552-7042630)
chr4 (141-223)||(6997410-6997492)
chr4 (141-223)||(7058616-7058698)
chr4 (141-223)||(7049701-7049783)
chr4 (142-223)||(7015933-7016014)
chr4 (141-223)||(7022835-7022917)
chr4 (15-146)||(7042695-7042826)
chr4 (15-146)||(7049848-7049982)
chr4 (142-223)||(7029590-7029671)
chr4 (45-145)||(7058764-7058865)
chr4 (15-95)||(7073697-7073778)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 7006402 - 7006183
Alignment:
Q  11 atcaatcattgtcttgcagtgaattttgtagcacagtaagcagaatattatatttt-------ccagccaagatgtgaagaagacgaaatcacgaaaaaa 103  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||||       || | ||||||||||||||||||||||||||||||||    
T  7006402 atcaatcattatcttgtagtgaattttgtagcacagtaaccagaatattctttttttttttttccgggcaagatgtgaagaagacgaaatcacgaaaaaa 7006303  T
Q  104 ctgaaacatgaaaccttgacacgattttcatttcctttttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7006302 ctgaaacatgaaaccttgacacgattttcatttcctttttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact 7006203  T
Q  204 ctggagctgtatgtcctgaa 223  Q
    | ||||||||||||||||||    
T  7006202 caggagctgtatgtcctgaa 7006183  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 7008248 - 7008033
Alignment:
Q  11 atcaatcattgtcttgcagtgaattttgtagcacagtaagcagaatattatatttt-ccagccaagatgtgaagaagacgaaatcacgaa-----aaaac 104  Q
    |||||||||| |||||||||||||||||| |||| ||||||| |||||| | |||| |||||||| || |||||||||||||||||||||     |||||    
T  7008248 atcaatcattatcttgcagtgaattttgtcgcaccgtaagcataatattttttttttccagccaaaatatgaagaagacgaaatcacgaagaaaaaaaac 7008149  T
Q  105 tgaaacatgaaaccttga-cacgattttcatttcctttttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact 203  Q
    | |||||||||||||| | |||||||||| | ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7008148 ttaaacatgaaacctttaacacgattttcttgtcctttttacaaacgcaaattagatatccacctaaggaacatgggaaaacattgctcaggagtgtact 7008049  T
Q  204 ctggagctgtatgtcc 219  Q
      |||||| |||||||    
T  7008048 aaggagctatatgtcc 7008033  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 7042630 - 7042552
Alignment:
Q  141 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7042630 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgtatgtcc 7042552  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 6997492 - 6997410
Alignment:
Q  141 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaa 223  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6997492 tttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactcaggagctgtatgtcctgaa 6997410  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 7058698 - 7058616
Alignment:
Q  141 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  7058698 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaa 7058616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 7049783 - 7049701
Alignment:
Q  141 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaa 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  7049783 tttacaaaggcaaattagatatccacctagagaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaa 7049701  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 7016014 - 7015933
Alignment:
Q  142 ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaa 223  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  7016014 ttacaaaggtaaattagatatccacctagtgaacatgccaaaacattgatcaggagtgtactcaggagctgtatgtcctgaa 7015933  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 7022917 - 7022835
Alignment:
Q  141 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactctggagctgtatgtcctgaa 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  | | | ||||||||||||||||||    
T  7022917 tttacaaaggcaaattagatatccacctagtgaacatggcaaaacattgttcaggagcatccgcaggagctgtatgtcctgaa 7022835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 7042826 - 7042695
Alignment:
Q  15 atcattgtcttgcagtgaattttgtagcacagtaagcagaatatt-atattttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatg 113  Q
    |||||| ||||||| ||||||||||| || ||||||||||||||| || ||||||||||||||||||| ||| | | |||||  ||| ||||||||||||    
T  7042826 atcattatcttgcactgaattttgtaacatagtaagcagaatattcattttttccagccaagatgtgatgaacatg-aatcagaaaacaactgaaacatg 7042728  T
Q  114 aaaccttgacacgattttcatttcctttttaca 146  Q
     ||||||||||  |||||| | |||||||||||    
T  7042727 caaccttgacattattttcttgtcctttttaca 7042695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 7049982 - 7049848
Alignment:
Q  15 atcattgtcttgcagtgaattttgtagcacagtaagcagaatatta---tattttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaaca 111  Q
    |||||| ||||||| ||||||||||| ||||||||||||||| ||    | ||||| | ||||||||||||||||| | ||||| |||| |||| |||||    
T  7049982 atcattatcttgcattgaattttgtaacacagtaagcagaatcttcattttttttctaaccaagatgtgaagaagatggaatcaggaaacaacttaaaca 7049883  T
Q  112 tgaaaccttgacacgattttcatttcctttttaca 146  Q
    |||||||||||||  |||||| | | |||||||||    
T  7049882 tgaaaccttgacattattttcttgttctttttaca 7049848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 7029671 - 7029590
Alignment:
Q  142 ttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtact-ctggagctgtatgtcctgaa 223  Q
    ||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||| ||| | ||||||||||||||||||    
T  7029671 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaa 7029590  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 7058865 - 7058764
Alignment:
Q  45 agtaagcagaatatt-atattttccagccaagatgtgaagaagacgaaatcacgaaaaaactgaaacatgaaaccttgacacgattttcatttccttttt 143  Q
    |||||||||||| || ||||||||  |||||||||||||| |||   ||||| |||| |||||||||||||||||||||||  |||||| | || |||||    
T  7058865 agtaagcagaatcttcatattttcttgccaagatgtgaagcagatagaatcaggaaacaactgaaacatgaaaccttgacattattttcttgtctttttt 7058766  T
Q  144 ac 145  Q
    ||    
T  7058765 ac 7058764  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 7073778 - 7073697
Alignment:
Q  15 atcattgtcttgcagtgaattttgtagcacagtaagcagaatatt-atattttccagccaagatgtgaagaagacgaaatca 95  Q
    |||||| ||||||||||| ||||||| ||  ||||| ||||| || || | ||||||||||||||| ||||||| |||||||    
T  7073778 atcattatcttgcagtgagttttgtaacatggtaagaagaatcttcatttgttccagccaagatgtaaagaagatgaaatca 7073697  T

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