View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_1 (Length: 432)
Name: NF10658_low_1
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_1 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 45846397 - 45845979
Alignment:
| Q |
1 |
gtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggtctatgtttacaaaaaaccattctcttgctact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846397 |
gtctcgccgttggaatggaacctatttgtggacaagcttttggtgcaaaaagattcactctccttggtctatgtttacaaaaaaccattctcttgctact |
45846298 |
T |
|
| Q |
101 |
cttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagatatagctacacaagctcaaatctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846297 |
cttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagatatagctacacaagctcaaatctat |
45846198 |
T |
|
| Q |
201 |
cttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846197 |
cttctatattccattcctgatctcttagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtg |
45846098 |
T |
|
| Q |
301 |
ctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaatcaaaggtgtagctttaagtggggtgtggacaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45846097 |
ctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaatcaaaggtgtagctttaagtggggtgtggacaaa |
45845998 |
T |
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| Q |
401 |
tttcaaccttgttgcatct |
419 |
Q |
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| T |
45845997 |
tttcaaccttgttgcatct |
45845979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 23728 - 24134
Alignment:
| Q |
9 |
gttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggtctatgtttacaaaaaaccattctcttgctactcttaactt |
108 |
Q |
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||||| |||||||| |||||||| |||||||||||||| |||| ||||||||| |||||||| ||| | |||| ||||||||| ||||| || || || |
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| T |
23728 |
gttggtatggaaccaatttgtggtcaagcttttggtgctaaaaaattcactcttcttggtctttgtcttcaaagaaccattcttttgcttcttttggttt |
23827 |
T |
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| Q |
109 |
ctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaagaagaagatatagctacacaagctcaaatctatcttctata |
208 |
Q |
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| || || || || || |||||||||| ||| | || ||| | || | | |||||| ||||| ||||| ||| ||||||| ||| ||||||| |
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| T |
23828 |
caataccaatatctttttcatggctttacatgaaaaaaatgcttttgttttttaaccaagatgaagaaatagcaacaatggctcaaacttatattctata |
23927 |
T |
|
| Q |
209 |
ttccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtgctacttta |
308 |
Q |
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||| ||||||||||| || || ||||| ||| |||||||||| ||||||||| | || | |||||||||||||| ||||| ||||||||||| ||||| |
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| T |
23928 |
ttcaattcctgatcttattgctcaatcctttatacaccctttgagaatttacttaaggactcaatccattactcttcctcttacactttgtgcaactttt |
24027 |
T |
|
| Q |
309 |
gcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaatcaaaggtgtagctttaagtggggtgtggacaaatttcaacc |
408 |
Q |
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|||| |||||||||| || ||||| |||||||||||| | || ||| |||| || ||||| || |||||||||||||| |||||||||||||||| |
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| T |
24028 |
tcaatccttcttcacataccaataaattattttcttgttatatatcttaatttgggtataaaaggagttgctttaagtggggtatggacaaatttcaacc |
24127 |
T |
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| Q |
409 |
ttgttgc |
415 |
Q |
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||||||| |
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| T |
24128 |
ttgttgc |
24134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 2989867 - 2989923
Alignment:
| Q |
12 |
ggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttggt |
68 |
Q |
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| T |
2989867 |
ggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttggt |
2989923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 346
Target Start/End: Original strand, 2990069 - 2990201
Alignment:
| Q |
214 |
ttcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtgctactttagcaat |
313 |
Q |
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|||||||||| |||||||||| || |||||||||| ||||| || ||| ||||||||||||| || || ||| | ||| |||||||||| | || |
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| T |
2990069 |
ttcctgatcttgtagcacaatcattgctacaccctttgagaatctatcttcgaagccaatccataacacttcctttaacatacagtgctactttgtctat |
2990168 |
T |
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| Q |
314 |
ttttcttcacattcccataaactattttcttgt |
346 |
Q |
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| T |
2990169 |
tcttcttcacattcctataaactattttcttgt |
2990201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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