View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_10 (Length: 330)
Name: NF10658_low_10
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 122 - 323
Target Start/End: Complemental strand, 54728899 - 54728699
Alignment:
| Q |
122 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
217 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728899 |
aagaaagagctctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
54728800 |
T |
|
| Q |
218 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttc |
317 |
Q |
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|||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728799 |
accactcata----gttta-tgttgtattgatctatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaatgttttc |
54728705 |
T |
|
| Q |
318 |
ttctct |
323 |
Q |
| |
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|||||| |
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| T |
54728704 |
ttctct |
54728699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 122 - 323
Target Start/End: Complemental strand, 5303292 - 5303091
Alignment:
| Q |
122 |
aagaaagagatctgatggctgaaggtctgatcaggttggtgtct----gcccatgcaagccaacagatttataccagagctacaaacacctaaattttat |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
5303292 |
aagaaagagatctgatggctaaaggtctgatcaggttggtgtctatctgcccatgcaagcgaacagatttataccaatgctacaaacacctaaattttat |
5303193 |
T |
|
| Q |
218 |
accactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtctt-aatgtttt |
316 |
Q |
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|||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5303192 |
accactcata----gttta-tgttgtattgatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaattgatgtcttaaatgtttt |
5303098 |
T |
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| Q |
317 |
cttctct |
323 |
Q |
| |
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||||||| |
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| T |
5303097 |
cttctct |
5303091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 26588599 - 26588524
Alignment:
| Q |
134 |
tgatggctgaaggtctgatcaggttggtgtctgcccatgcaagccaacagatttataccagagctacaaacaccta |
209 |
Q |
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|||||||| ||||| | ||||||||||||||||| ||| |||| || |||||||| ||||| |||||||||||||| |
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| T |
26588599 |
tgatggctaaaggtttaatcaggttggtgtctgctcattcaagtcagcagatttacaccagggctacaaacaccta |
26588524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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