View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_11 (Length: 328)
Name: NF10658_low_11
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 6721438 - 6721140
Alignment:
| Q |
18 |
gactacacaatcaatcaatggaaattattccattttttcgaaactgtattacacccacctaatcaagttttgcgttgcgattcatacaccaccttgaatg |
117 |
Q |
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| T |
6721438 |
gactacacaatcaatcaatggaaattattccattttttcgaaactgtattacacccaccaaatcaagtgttgcgttgcgattcatacaccgccttgaatg |
6721339 |
T |
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| Q |
118 |
gacatgaaaataatcagaagtgtttacttaagcttatccttttaataattaagtccagctattttcacactatatgaagaacaaacattagttaacattg |
217 |
Q |
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| T |
6721338 |
gacatgaaaataatcagaagtgtttaattaagcttatccttttaataattaagtccagcaattttcacactatatgaagaacaaacattagttaacattg |
6721239 |
T |
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| Q |
218 |
ataaaatgttgctccttttggagctcacacacaatcgaaaatgattttttataatcttnnnnnnncgggccaaaatcagttattaacatttccttcttca |
317 |
Q |
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| T |
6721238 |
ataaaatgttgctccttttggagctca--cacaatcgaaaatgattttttataatcttaaacaaacgggccaaaatcaattattaacatttccttcttca |
6721141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 6733137 - 6732994
Alignment:
| Q |
86 |
tttgcgttgcgattcatacaccaccttgaatggacatgaaaataatcagaagtgtttacttaagcttatccttttaataattaagtccagctattttcac |
185 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||| ||| |||||| || ||||| || |
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| T |
6733137 |
tttgcggtgcgattcatacaccaccttgaatggacatgaaaatagtcagaattgtttaattaagcttatccttttaacaatgaagtcctgcaattttaac |
6733038 |
T |
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| Q |
186 |
actatatgaagaacaaacattagttaacattgataaaatgttgc |
229 |
Q |
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| T |
6733037 |
actatataaagtacaaacattagttaacattgataaaacgttgc |
6732994 |
T |
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