View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10658_low_12 (Length: 303)
Name: NF10658_low_12
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_12 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10582049 - 10582301
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10582049 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcaagaacgtggataatgttgttgatgccaaagaggcacatgatgccagcttgaaaagc |
10582148 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10582149 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcataaagtgaaagttgtgcttgatatgttgcaaccagcaataaatt |
10582248 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10582249 |
tgaagagcctgaatatttgcttatatggcgggacaagttttcctagttggttg |
10582301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 10362428 - 10362179
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10362428 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctagataatgttgttgatgccaaagaggcacatgatgccaacttgaaaagc |
10362329 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
10362328 |
aaagagaaaattcaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgcttgatatgttgcaaccaccaataaatt |
10362229 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10362228 |
tgaagagcctgaatatttgc---catggtgggacaagttttcctagttggttg |
10362179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10033439 - 10033691
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
10033439 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctggataatgttgttgatgccagagaggcacacgatgcaaacctgaaaagc |
10033538 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
10033539 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatattttgcaaccaccaataaatc |
10033638 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
10033639 |
taaagagcctgaatatttgtttgtatggtgggacaagctttccgagttggttg |
10033691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10262137 - 10262389
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
10262137 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctggataatgttgttgatgccagagaggcacacgatgcaaacctgaaaagc |
10262236 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
10262237 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatc |
10262336 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
| ||||||||||| ||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
10262337 |
taaagagcctgaaaatttgtttgtatggtgggacaagctttccgagttggttg |
10262389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10128364 - 10128616
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |
|
|
| T |
10128364 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctggataatgttgttgatgccagagaggcacacgatgcaaacctgaaaggc |
10128463 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
10128464 |
aaagagaaaattgaggagttagaactgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatc |
10128563 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
10128564 |
taaagagcctgaatatttgtttgtatggtgggacaagctttccgagttggttg |
10128616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 10374475 - 10374223
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||| || |
|
|
| T |
10374475 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctagataatgttgttgatgccagagaggcacacgatgcaaacctgaaaggc |
10374376 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10374375 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagacttgcaaaaagtaaaagttgtgttggatatgttgcaaccagcaataaatt |
10374276 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
10374275 |
tgaagagcctgcatatttgcttgtatggtgggacaagctttccgagttggttg |
10374223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10518924 - 10519176
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
10518924 |
agagctcaggaaattcccaaacctacaaggaaaacttaccatcaagaacctggataatgtggttgatgccagagaggcacacgatgccaacctaaaaagc |
10519023 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
10519024 |
atagagacaatcgaggagttagagctgatatggggaaaacaaagtgacgactcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatt |
10519123 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
10519124 |
tgaagagcctgaatatttgtttgtatggtgggacaagttttccgagttggttg |
10519176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10664965 - 10665217
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10664965 |
agagctaaggaaattcccaaacctacagggaaaacttaccatcaagaacctggataatgttgttgatgccagagaggcacacgatgccaacttgaaaagc |
10665064 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
10665065 |
aaagagaagattgagaagttagagctgatatggggaaaacaaagtgaagattcgcaaaaagtgaaagttgtactcgatatgttgcaaccaccaataaatt |
10665164 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
10665165 |
tgaagagcctgaatattttcttgtatggtggaacaagctttccaagttggttg |
10665217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10090229 - 10090481
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10090229 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctgtataatgttgttgatgcctgggaggcacgtgatgccaacttgaaaagc |
10090328 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10090329 |
aaagagaaaattgaggagttagagctgatatggggaaagcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaacctccaataaatc |
10090428 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
10090429 |
tgaagagcttgaatatttgcttgtatggtgggacaagctttccgagttggttg |
10090481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 10197112 - 10197364
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10197112 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaagaacctgtataatgttgttgatgcctgggaggcacgtgatgccaacttgaaaagc |
10197211 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10197212 |
aaagagaaaattgaggagttagagctgatatggggaaagcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaacctccaataaatc |
10197311 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
10197312 |
tgaagagcttgaatatttgcttgtatggtgggacaagctttccgagttggttg |
10197364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 285
Target Start/End: Complemental strand, 10432674 - 10432425
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
10432674 |
agagctaaggaaattcccaaacctacagggaaaacttaccatcaagaacctggataatgttgttgatgccagagaggcacacgatgccaacctaaaaagc |
10432575 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
10432574 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagactcgcacaaagtgaaagttgtgctggatatgttgcaaccaccaatgagta |
10432475 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttgg |
285 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||| ||||| ||||| |||||| |
|
|
| T |
10432474 |
tgaagagcctaaatatttgcttgtatgatggtacaagctttccgagttgg |
10432425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 9840300 - 9840552
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
9840300 |
agagctcaggaaattcccaaacctacagggaaaacttaccatcaagaacctggataatgttgttgatgcccgagacgcacacgatgccaacctgaaaagc |
9840399 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9840400 |
aaagagcaaattgaggagttagagctgatatggggaaaacatagtgaagattcgcaagaagtgaaagttgtgctcgatatgttgcaaccaccaataaatc |
9840499 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
||||| || || ||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
9840500 |
tgaaggtgcttaaaattgacttgtatggtgggacaagttttccgagttggttg |
9840552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 9851178 - 9851430
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
9851178 |
agagctaaggaaattcccaaacctacacggaaaacttaccatcaagaacctggataatgttgttgatgcccgagaggcacacgatgccaacctgaaaagc |
9851277 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9851278 |
aaagagcaaattgaggagttagagctgatatggggaaaacatagtgaagattcgcaagaagtgaaagttgtgctcgatatgttgcaaccaccaataaatc |
9851377 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
||||| || || ||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
9851378 |
tgaaggtgcttaaaattgacttgtatggtgggacaagttttccgagttggttg |
9851430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 46 - 285
Target Start/End: Complemental strand, 11780602 - 11780363
Alignment:
| Q |
46 |
aaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaa |
145 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11780602 |
aaattcccaaacctacatagaacacttaccatcaagaacctggataatgttgttgatgccggagaggcacacgatgccaacctgaaaagcaaagaaaaaa |
11780503 |
T |
|
| Q |
146 |
ttgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcct |
245 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||| || |||||||| |||||||||| |
|
|
| T |
11780502 |
ttgaggatttagagctaatatggggaaaacaaagtgacgagtcgcaaaaagtgaaagttgtgctcgatatgctgcagccgccaataaatctgaagagcct |
11780403 |
T |
|
| Q |
246 |
gaatatttgcttatatggtgggacaagttttcctagttgg |
285 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
11780402 |
gaatatttgcttgtatggtgggacaagctttccaagttgg |
11780363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 11770673 - 11770922
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
||||||| | ||| || |||||||||| ||| |||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
11770673 |
agagctcggaaaactcccaaacctacatagaacacttaccatcaagaacctggataatgtttttgattccgtagaggcacacgatgccaacttgaaaagc |
11770772 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||| || |||||||| |
|
|
| T |
11770773 |
aaagaaaaaattgaggatttagagctaatatggggaaaacaaagtgacgagtcgcaaaaagtgaaagatgtgctcgatatgctgcagccgccaataaatc |
11770872 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttgg |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
11770873 |
tgaagagcctgaatatttgcttgtatggtgggacaagctttccgagttgg |
11770922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 10185819 - 10186070
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| |||| |||| ||||||||| ||||||||| || ||||| |||| ||| |||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
10185819 |
agagctaagtagattcacaaacctacggcgaaaacttattattaagaacttggaaaatattgttgatgccacagaggcatgtgatgccaaccttaaaagc |
10185918 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
10185919 |
aaagaccaaattgaggagttagagatgatatggggaaaacaaagtgaagattcacaaaaagtgaaagtattgctagatatgttgcaaccaccaataaatt |
10186018 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggtt |
287 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||| | |||||||| |
|
|
| T |
10186019 |
tgaagagtctgaatatttgcttgtatggtgggacaagcttttcgagttggtt |
10186070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 80 - 287
Target Start/End: Original strand, 10078893 - 10079100
Alignment:
| Q |
80 |
agaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaattgaggagttagagctgatatggggaaaacaaag |
179 |
Q |
| |
|
||||| |||| ||| |||||||||||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10078893 |
agaacttggaaaatattgttgatgccacagaggcatgtgatgccaaccttaaaagcaaagaccaaattgaggagttagagatgatatggggaaagcaaag |
10078992 |
T |
|
| Q |
180 |
tgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcctgaatatttgcttatatggtgggacaagttttcct |
279 |
Q |
| |
|
|||||| || |||||||||||||| |||| ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||| | |
|
|
| T |
10078993 |
tgaagattcacaaaaagtgaaagtattgctcgatatgttgcaaccaccaataaatttgaagagtctgaatatttgcttgtatggtgggacaagcttttcg |
10079092 |
T |
|
| Q |
280 |
agttggtt |
287 |
Q |
| |
|
|||||||| |
|
|
| T |
10079093 |
agttggtt |
10079100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 10678887 - 10679119
Alignment:
| Q |
46 |
aaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaa |
145 |
Q |
| |
|
|||||| || || |||| ||||||||||| ||| ||||||| ||||||| |||||||||| || ||| | ||||||||| || || ||||||| ||| |
|
|
| T |
10678887 |
aaattcccacacttacagggaaaacttactatcaagaaccttcataatgtcgttgatgccacggatgcaaaagatgccaacctggaagacaaagagcaaa |
10678986 |
T |
|
| Q |
146 |
ttgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcct |
245 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||| |||||| | ||||||| || |
|
|
| T |
10678987 |
ttgaggagttagagctgttgtggggaaaacaaagtgaagactcgcgaaaagtgaaagttgttctagatatgttgcaaccaccaataagtctgaagaggct |
10679086 |
T |
|
| Q |
246 |
gaatatttgcttatatggtgggacaagttttcc |
278 |
Q |
| |
|
|||| |||| ||||| |||||||||||||| |
|
|
| T |
10679087 |
tcgtattggcttgtatggcgggacaagttttcc |
10679119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 10502035 - 10502230
Alignment:
| Q |
46 |
aaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaa |
145 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10502035 |
aaattctcgcacctacaaggaaaacttaccatcaagaacctaaataatgtagttgatgccacggaggcacacgatgccaacctgaaaagcaaagagaaaa |
10502134 |
T |
|
| Q |
146 |
ttgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaaga |
241 |
Q |
| |
|
|||| ||||||||| || ||||||| ||||||| |||||| || ||||||| |||| ||| || || |||||||| ||| || |||| ||||||| |
|
|
| T |
10502135 |
ttgaagagttagagttgttatggggcaaacaaattgaagactcacaaaaagagaaaaatgtacttgagatgttgcatccatcagtaaacttgaaga |
10502230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 10530098 - 10530328
Alignment:
| Q |
46 |
aaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaa |
145 |
Q |
| |
|
|||||| || || |||| ||||||||||| ||| |||| ||| ||||||| |||||||||| || ||| | ||||||||| || || | |||| ||| |
|
|
| T |
10530098 |
aaattcccacacttacagggaaaacttactatcaagaaactgcataatgtcgttgatgccatggatgcaaaagatgccaacctggaa--gacagagcaaa |
10530195 |
T |
|
| Q |
146 |
ttgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcct |
245 |
Q |
| |
|
|||||||||||| ||| | ||||||||| |||||||||| |||| ||||||||||||||| || ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
10530196 |
ttgaggagttaggtctgttgtggggaaaagaaagtgaagactcgcgaaaagtgaaagttgttctagatatgttgcaaccaccaataactctgaagagcct |
10530295 |
T |
|
| Q |
246 |
gaatatttgcttatatggtgggacaagttttcc |
278 |
Q |
| |
|
||||| |||| ||||| |||||||||||||| |
|
|
| T |
10530296 |
tcatattggcttgtatggcgggacaagttttcc |
10530328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 56232 - 55980
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
56232 |
agagctaaggaaattcccaaacctacaaggaaaacttaccatcaataacctggataatgttgttgatgccagagaggcacacgatgcaaacctgaaaagc |
56133 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
56132 |
aaagagaaaattgaggagttagagctgatatggggaaatcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatt |
56033 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
56032 |
tgaagagcttgaatatttgtttgtatggtgggacaagctttccgagttggttg |
55980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 26908327 - 26908579
Alignment:
| Q |
36 |
agagctcagtaaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagc |
135 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
26908327 |
agagctcagaaaatttcaaaacctacagggaaaacttaccattaagaacctgcataatgtcgttgatgccacagaggcagaagatgccaacttgaaaaga |
26908426 |
T |
|
| Q |
136 |
aaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatt |
235 |
Q |
| |
|
||||||||||| |||||||||||| || | |||||||||||||||||||| || | | |||||||| ||||||| ||||||||||| ||| |||||||| |
|
|
| T |
26908427 |
aaagagaaaatcgaggagttagagttgctttggggaaaacaaagtgaagattcactacaagtgaaatttgtgcttgatatgttgcatccaccaataaatc |
26908526 |
T |
|
| Q |
236 |
tgaagagcctgaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||| || ||||||||| |
|
|
| T |
26908527 |
tgaagagcctgaaaattgacttgtatggtgggacaagtttcccgagttggttg |
26908579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 288
Target Start/End: Complemental strand, 44956297 - 44956055
Alignment:
| Q |
46 |
aaattctcaaacctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaa |
145 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||| ||||| || ||||||| | |||||||| ||||||||| |||| ||| |||||||||||||| ||| |
|
|
| T |
44956297 |
aaattttcacacctacaaggaaaactcatcatgaagaacttgcataatgtcatagatgccaaggaggcacactatgcgaacctgaaaagcaaagagcaaa |
44956198 |
T |
|
| Q |
146 |
ttgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcct |
245 |
Q |
| |
|
|||| || || |||||| ||||||||||||| |||||||| |||| |||||||||||| ||||| ||||||||||||||| |||| || ||||||| || |
|
|
| T |
44956197 |
ttgaagacttggagctgctatggggaaaacatagtgaagactcgctaaaagtgaaagtcgtgcttgatatgttgcaaccaccaatgaacctgaagagtct |
44956098 |
T |
|
| Q |
246 |
gaatatttgcttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|| ||| ||| |||||||||||||| ||||| | ||||||| |
|
|
| T |
44956097 |
aaaaattgacttctatggtgggacaagctttccaaattggttg |
44956055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 288
Target Start/End: Original strand, 11486494 - 11486726
Alignment:
| Q |
56 |
acctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaattgaggagtt |
155 |
Q |
| |
|
|||||||||||| | |||||| |||||||| ||||||| ||||||||| ||||||| | ||||||||| | |||||||||||| |||||||| || |
|
|
| T |
11486494 |
acctacaaggaagcttaaccatcaagaacctgcataatgtcattgatgccacagaggcagaagatgccaaccttaaaagcaaagagcaaattgagatatt |
11486593 |
T |
|
| Q |
156 |
agagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaaccagcaataaatttgaagagcctgaatatttgc |
255 |
Q |
| |
|
| | |||| |||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||| ||| ||||||| | |||| | |||| ||| | |
|
|
| T |
11486594 |
aaatctgaaatggggaaaattaagtgaagactcgctaaaagtgaaagttgtgcttgatatgttgcatccaccaataaactcgaagggactgagcattgac |
11486693 |
T |
|
| Q |
256 |
ttatatggtgggacaagttttcctagttggttg |
288 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||| |
|
|
| T |
11486694 |
ttgtatggtgggacaagttttccgaattggttg |
11486726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 17851534 - 17851367
Alignment:
| Q |
58 |
ctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaattgaggagttag |
157 |
Q |
| |
|
|||||||||| |||||||||| |||||||| || |||| |||| |||| ||| ||| |||||||| |||||||||||||||||||| ||| |||| | |
|
|
| T |
17851534 |
ctacaaggaacacttaccatcaagaacctgcatgatgtcattgaggccagagatgcaggtgatgccaatttgaaaagcaaagagaaaatggagaagttgg |
17851435 |
T |
|
| Q |
158 |
agctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctggatatgttgcaacca |
225 |
Q |
| |
|
|||| |||||| |||||| |||||| |||| || || |||| ||||| ||||||||||||||| |
|
|
| T |
17851434 |
agctacaatggggcgaacaaactgaagactcgcgaatagaaaaagacgtgcttgatatgttgcaacca |
17851367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 29838101 - 29838200
Alignment:
| Q |
58 |
ctacaaggaaaacttaccatcgagaacctggataatgttgttgatgccaaagaggcacacgatgccaacttgaaaagcaaagagaaaattgaggagttag |
157 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||| |||| ||| |||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
29838101 |
ctacagggaaaacttaccatcttgaacctgcataatgtcactgattccatggaggcattttctgccaacttaaaaagcaaagagcaaattgaggagttag |
29838200 |
T |
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