View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_13 (Length: 292)
Name: NF10658_low_13
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 44801715 - 44801453
Alignment:
| Q |
18 |
tcatgtaggttttaggaagaaagaaaatctagcgtcaaggaaatgtctacggctataagttgattagaatatgaactagtgaaccggacaaactaaacca |
117 |
Q |
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| T |
44801715 |
tcatgtaggttttaggaagaaagaaaatctagtgtcaaggaaatgtctacggctataagttgattaga---tgaactagtgaaccggacaaactaaacca |
44801619 |
T |
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| Q |
118 |
atctaatatgtaaaatacaacgagcactatgcaaatagnnnnnnnaattaaattgtagtaaaatttatgtcttacatatgtgatggtnnnnnnnngtcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44801618 |
atctaatatgtaaaatacaacgagcactatgcaaatagtttttttaattaaattgtagtaaaatttatgtcttacatatgtgatggtaaaaaaaagtcca |
44801519 |
T |
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| Q |
218 |
ctttcacacggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44801518 |
ctttcacacggtccctttcataagaaaccatctctctcaaacacttagaaaccctaactttcatct |
44801453 |
T |
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