View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_low_22 (Length: 250)

Name: NF10658_low_22
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_low_22
NF10658_low_22
[»] chr4 (5 HSPs)
chr4 (142-240)||(16003528-16003626)
chr4 (142-240)||(15041630-15041729)
chr4 (142-240)||(15112695-15112794)
chr4 (142-239)||(15039902-15040000)
chr4 (142-239)||(15114424-15114522)
[»] chr7 (3 HSPs)
chr7 (142-233)||(10868012-10868104)
chr7 (142-240)||(10866295-10866394)
chr7 (159-240)||(20186152-20186233)
[»] chr6 (3 HSPs)
chr6 (142-233)||(30579990-30580081)
chr6 (142-227)||(34244758-34244844)
chr6 (160-224)||(13214011-13214075)
[»] chr8 (2 HSPs)
chr8 (142-233)||(30187755-30187847)
chr8 (193-233)||(22692478-22692518)
[»] chr3 (3 HSPs)
chr3 (142-222)||(34143012-34143093)
chr3 (150-233)||(19844733-19844817)
chr3 (142-187)||(8584450-8584495)
[»] chr1 (1 HSPs)
chr1 (152-233)||(17309792-17309874)
[»] chr5 (1 HSPs)
chr5 (150-239)||(33566762-33566853)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 16003528 - 16003626
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcatcaatctttttcaatacaattcataatgaattctaagggttttacctatg 240  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||    
T  16003528 tagttagggtaattgaggtctataaaaggaccaaccatatactcattcatcaatctttttaaatacaatttataatgaattctaagagtttttcctatg 16003626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 15041729 - 15041630
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggttttacctatg 240  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  15041729 tagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatg 15041630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 15112695 - 15112794
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggttttacctatg 240  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  15112695 tagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccctatg 15112794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 15040000 - 15039902
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggttttacctat 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||| |||||    
T  15040000 tagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctat 15039902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 15114424 - 15114522
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggttttacctat 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||| |||||    
T  15114424 tagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccctat 15114522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 10868012 - 10868104
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||    
T  10868012 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcatataatctttttcaatacaattcaatatgaattctaagggtttt 10868104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 10866295 - 10866394
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggttttacctatg 240  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||||||||| |  |||||||||||||||||| ||||||    
T  10866295 tagttagggtaattgagatttataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaatttaatatgaattctaagggttttccctatg 10866394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 20186152 - 20186233
Alignment:
Q  159 gtctataaaaggaccaaccatgtactcattcatcaatctttttcaatacaattcataatgaattctaagggttttacctatg 240  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  20186152 gtctatataaggatcaaccatgtactcattcattaatctttttcaatacaattcaatatgaattctaagggttttccctatg 20186233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 30580081 - 30579990
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcatcaatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    ||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30580081 tagttagggtaattgaggtctataatatgatcaaccatgaactcattcatcaatctttttcattacaattcataatgaattctaagggtttt 30579990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 34244758 - 34244844
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaag 227  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  34244758 tagttaaggtcattgaggtctataaaaggaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaag 34244844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 13214075 - 13214011
Alignment:
Q  160 tctataaaaggaccaaccatgtactcattcatcaatctttttcaatacaattcataatgaattct 224  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  13214075 tctataaaaggaccaaccatgtacttattcatcaatcttttttaatacaattcataatgaattct 13214011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 30187847 - 30187755
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    |||||| || |||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||    
T  30187847 tagttaaggaaattgaggtctataaaaggaccaatcatgtactcattcatgtaatttttttcaatacaattcataatgaattttaagggtttt 30187755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 22692478 - 22692518
Alignment:
Q  193 aatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  22692478 aatctttttcaatacaattcaatatgaattctaagggtttt 22692518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 34143012 - 34143093
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcattcat-caatctttttcaatacaattcataatgaatt 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||  |||||||    
T  34143012 tagttagggtaattgagttctataaaaggaccaaccatgtactcattcatgcaatctttttcaatctaattcaatatgaatt 34143093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 19844817 - 19844733
Alignment:
Q  150 gtaattgaggtctataaaaggaccaaccatgtactcattc--atcaatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    |||||||||||||||||||| |||| | |||||||||||   ||||||||||||||||||||||||  ||  ||||||||||||||    
T  19844817 gtaattgaggtctataaaag-accatctatgtactcattactatcaatctttttcaatacaattcaatattcattctaagggtttt 19844733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 8584450 - 8584495
Alignment:
Q  142 tagttagggtaattgaggtctataaaaggaccaaccatgtactcat 187  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  8584450 tagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 8584495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 17309874 - 17309792
Alignment:
Q  152 aattgaggtctataaa-aggaccaaccatgtactcattcatcaatctttttcaatacaattcataatgaattctaagggtttt 233  Q
    |||||||||||||||| | ||||| ||||||||||||| || |||||||||||||||||||||  ||||||||||||||||||    
T  17309874 aattgaggtctataaataagaccatccatgtactcattaattaatctttttcaatacaattcaatatgaattctaagggtttt 17309792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 33566853 - 33566762
Alignment:
Q  150 gtaattgaggtctataaaaggaccaaccatgtactcattcatc---aatctttttcaatacaattcataatgaattctaagggttttacctat 239  Q
    |||||| ||||||||||||| |||| |||||||||||||  ||   ||||||||||||| |||||||  ||||||||||| |||||| |||||    
T  33566853 gtaatttaggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 33566762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University