View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_low_23 (Length: 250)

Name: NF10658_low_23
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_low_23
NF10658_low_23
[»] chr8 (11 HSPs)
chr8 (19-240)||(10201865-10202086)
chr8 (15-240)||(10208938-10209163)
chr8 (172-236)||(1963531-1963595)
chr8 (169-237)||(894467-894535)
chr8 (169-236)||(1965198-1965265)
chr8 (185-236)||(2436956-2437007)
chr8 (169-237)||(906108-906176)
chr8 (168-236)||(1969139-1969207)
chr8 (189-236)||(2004434-2004481)
chr8 (193-236)||(2018217-2018260)
chr8 (190-236)||(2007814-2007860)
[»] chr6 (3 HSPs)
chr6 (169-224)||(8294432-8294487)
chr6 (169-230)||(844998-845059)
chr6 (169-230)||(870282-870343)
[»] chr7 (1 HSPs)
chr7 (170-215)||(26278395-26278440)
[»] chr5 (1 HSPs)
chr5 (170-203)||(5994891-5994924)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10202086 - 10201865
Alignment:
Q  19 aaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttaccaaatggttacatagagaggactaaagggaagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10202086 aaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttaccaaatggttacatagagaggactaaagggaagg 10201987  T
Q  119 gtttagtgctcccatattgggctccacaagcacaagttttgagccatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagag 218  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10201986 gtttagtgctcccatattgggccccacaagcacaagttttgagtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagag 10201887  T
Q  219 tgtggtgaatggtgtgcctttg 240  Q
    ||||||||||||||||||||||    
T  10201886 tgtggtgaatggtgtgcctttg 10201865  T

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Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 10209163 - 10208938
Alignment:
Q  15 tcctaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttaccaaatggttacatagagaggactaaaggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  10209163 tcctaaggataaagttgaaaatgattctaattttattgctaatagtaatgttgacccttttgaatttttaccaaatggttttacagagaggactaaaggg 10209064  T
Q  115 aagggtttagtgctcccatattgggctccacaagcacaagttttgagccatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttg 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10209063 aagggtttagtgctcccatattgggccccacaagcacaagttttgagtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttg 10208964  T
Q  215 agagtgtggtgaatggtgtgcctttg 240  Q
    ||||||||||||||||||||||||||    
T  10208963 agagtgtggtgaatggtgtgcctttg 10208938  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 1963531 - 1963595
Alignment:
Q  172 attggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||| |||||| ||  ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  1963531 attggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgcc 1963595  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 894535 - 894467
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct 237  Q
    |||||||| || ||| |||||||||||||||||  ||||||| | ||||||||||| ||||||||||||    
T  894535 tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcct 894467  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 1965198 - 1965265
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||||||||||||  ||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||    
T  1965198 tcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc 1965265  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 2436956 - 2437007
Alignment:
Q  185 tgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  2436956 tgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgcc 2437007  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 906108 - 906176
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcct 237  Q
    |||||||| |||||| |||||||||||||||||  ||||||| | |||| |||||| ||||| ||||||    
T  906108 tcaattggtgggtttttgagtcattgtggttggggttcaactttggagactgtggttaatggggtgcct 906176  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 1969139 - 1969207
Alignment:
Q  168 ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||||||| || ||  ||| ||||||||| ||||||||||| |||||||||||| || ||||||||||    
T  1969139 ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgcc 1969207  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 2004481 - 2004434
Alignment:
Q  189 tcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  2004481 tcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgcc 2004434  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 2018260 - 2018217
Alignment:
Q  193 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    ||||||||||||||||| |||||||||||| || ||||||||||    
T  2018260 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgcc 2018217  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 2007860 - 2007814
Alignment:
Q  190 cattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc 236  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||||||    
T  2007860 cattgtggctggaattcaacccttgagagtgtggtgcacggtgtgcc 2007814  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 8294487 - 8294432
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggt 224  Q
    |||||||| |||||| | |||||||||||||||| ||||||| | |||||||||||    
T  8294487 tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggt 8294432  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 845059 - 844998
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatgg 230  Q
    |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||| || |||||    
T  845059 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatgg 844998  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 870343 - 870282
Alignment:
Q  169 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatgg 230  Q
    |||||||| |||||| | | ||||||||||||||||||||| ||||| ||||| || |||||    
T  870343 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatgg 870282  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 26278395 - 26278440
Alignment:
Q  170 caattggagggtttgtgagtcattgtggttggaattcaactcttga 215  Q
    |||| |||||| |||||| ||||||||||||||| |||||||||||    
T  26278395 caatcggagggattgtgactcattgtggttggaactcaactcttga 26278440  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 5994924 - 5994891
Alignment:
Q  170 caattggagggtttgtgagtcattgtggttggaa 203  Q
    ||||||||||||| ||||||||||||||||||||    
T  5994924 caattggagggttagtgagtcattgtggttggaa 5994891  T

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