View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10658_low_26 (Length: 240)
Name: NF10658_low_26
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11781308 - 11781085
Alignment:
| Q |
1 |
ctgattctgtagcaatagttgttgaaccacttgcatctgcactgccagacgcagtagggccaaattttgaacagctaaccgaacatggtctacatactga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11781308 |
ctgattctgtagcaatagttgttgaaccacttgcatctgcactgccagacgcagtagggccaaattttgaaccgctaaccgaacatggtctacatactga |
11781209 |
T |
|
| Q |
101 |
aacagaacctgaagtatcggaagcggtggtatattacgagagccagaatcttattgaaggaacaaatattgactttccacaatcagattcaatgaagatt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11781208 |
aacagaacctgaattatcggaagcggtggtatattacgagagccagaatcttattgaaggaacaaatattgactttccacaatcagattcaatgaagatt |
11781109 |
T |
|
| Q |
201 |
gatggcgattcagaggtccgtact |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11781108 |
gatggcgattcagaggtccgtact |
11781085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 11789709 - 11789629
Alignment:
| Q |
65 |
ttttgaacagctaaccgaacatggtctacatactgaaacagaacctgaagtatcggaagcggtggtatattacgagagcca |
145 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||| || |||| ||| ||| |||| |
|
|
| T |
11789709 |
ttttgaacccctaactgaacatggtctacatactgaaactgaacctcaagtatcggaagccgtagtatgttatgagcgcca |
11789629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 15440141 - 15440241
Alignment:
| Q |
24 |
gaaccacttgcatctgcactgccagacgcagtagggccaaattttgaacagctaaccgaacatggtctacatactgaaacagaacctgaagtatcggaag |
123 |
Q |
| |
|
|||||||||||||| |||| | |||| ||| || | ||| | |||||| ||||| ||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
15440141 |
gaaccacttgcatccgcaccgacagatgcatcagtgtcaagtgttgaactcctaactgaacatggtctacatactgcagttgaacctcaagtatcggaag |
15440240 |
T |
|
| Q |
124 |
c |
124 |
Q |
| |
|
| |
|
|
| T |
15440241 |
c |
15440241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University