View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_27 (Length: 240)
Name: NF10658_low_27
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_27 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 13447701 - 13447922
Alignment:
| Q |
18 |
aatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacaca |
117 |
Q |
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| T |
13447701 |
aatgtcagactgacagaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacaca |
13447800 |
T |
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| Q |
118 |
ccaaaaattgaatcaaaacaattaagtttaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttg |
217 |
Q |
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| T |
13447801 |
ccaaaaattgaatcaaaacaattaag-gaaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttg |
13447899 |
T |
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| Q |
218 |
tggcaggtattgtggaatcaaaa |
240 |
Q |
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| T |
13447900 |
tggcaggtattgtggaatcaaaa |
13447922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 13454315 - 13454409
Alignment:
| Q |
147 |
aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgtggaatcaaaa |
240 |
Q |
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| T |
13454315 |
aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgtagaatcaaaa |
13454409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 13454185 - 13454249
Alignment:
| Q |
60 |
ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa |
123 |
Q |
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| T |
13454185 |
ttgaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa |
13454249 |
T |
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