View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_3 (Length: 415)
Name: NF10658_low_3
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 25 - 399
Target Start/End: Original strand, 41825620 - 41825993
Alignment:
| Q |
25 |
ttcgtcggagaagcattatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagctttc |
124 |
Q |
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| T |
41825620 |
ttcgtctgagaagcattatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagctttc |
41825719 |
T |
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| Q |
125 |
aaatagtactgcatagaaattatgagactgtcaagctacggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgaggaa |
224 |
Q |
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| T |
41825720 |
aaatagtactgcatagaaatt-tgagactgtcaagctatggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgaggaa |
41825818 |
T |
|
| Q |
225 |
ttcaattaaatcggttgaaaacataccagcaaaactgtggttataccagacattcccaactcataaaagaaagagacaagagccatgcctcttaatgtag |
324 |
Q |
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| T |
41825819 |
ttcaattaaatcggttgaaaacataccagcaaaactgtggttataccagacattcccaactcataaaagaaagagacaagagccatgcctcttaatgcag |
41825918 |
T |
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| Q |
325 |
gactggaaaacattacattatttaggattcatgaatgtagcagtatatttcacaaaagaaaaattatcagaaaat |
399 |
Q |
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| T |
41825919 |
gactgaaaaacattacattatttaggattcatgaatgtagcagtatatttcacaaaagaaaaattatcagaaaat |
41825993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 40 - 360
Target Start/End: Original strand, 41819024 - 41819348
Alignment:
| Q |
40 |
ttatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagctttcaaatagtactgcata |
139 |
Q |
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| T |
41819024 |
ttatacctgagaaaagatggaaccaattccgaccatcatcagaagttctgagaactgatttttgttgaaaccaaaaacagctttcaaatagtactgcata |
41819123 |
T |
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| Q |
140 |
gaaattatgagactgtcaag----ctacggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgaggaattcaattaaat |
235 |
Q |
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| T |
41819124 |
tgaattatgagactgtcgattatactatggaatttattaaaagaaatttgttaaatagtagtgacacaacaaggaaaaaatttgaggacttcaattaaat |
41819223 |
T |
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| Q |
236 |
cggttgaaaacataccagcaaaactgtggttataccagacattcccaactcataaaagaaagagacaagagccatgcctcttaatgtaggactggaaaac |
335 |
Q |
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| T |
41819224 |
cagttgaaaacataccagcaaaacactgtgtatgccggtcattcccaacttataaaagaaagagacaagagccacgcctcttaatgtaggactgaaaaat |
41819323 |
T |
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| Q |
336 |
attacattatttaggattcatgaat |
360 |
Q |
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| ||| |||||||||||||||||| |
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| T |
41819324 |
ttgacaatatttaggattcatgaat |
41819348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 24461020 - 24460961
Alignment:
| Q |
41 |
tatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgattt |
100 |
Q |
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| T |
24461020 |
tatacttgagaaaagattgaaccaattctgaccatcatcagaagttctgagaactgattt |
24460961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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