View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_31 (Length: 237)
Name: NF10658_low_31
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28733331 - 28733553
Alignment:
| Q |
1 |
agataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagta |
100 |
Q |
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| T |
28733331 |
agataaaccggctcaaagccgagcttgtttcagttaaagctgaagcagggcagctaaaatctgcactggatggtgccgaggtaagatatcagaatgagta |
28733430 |
T |
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| Q |
101 |
tatccaaagcacattgcagattagaagtgcctttgaacgactggagaacacgaaatcggaatcttatcaaagacaagctgaattatatgaggaattgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733431 |
tatccaaagcacattgcagattagaagtgcctttgaacgactggagaacacgaaatcggaatcttatcaaagacaagctgaattatatgaggaattgaaa |
28733530 |
T |
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| Q |
201 |
aaatctaaagccgatgttgaaga |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28733531 |
aaatctaaagccgatgttgaaga |
28733553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 22110174 - 22110303
Alignment:
| Q |
1 |
agataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagta |
100 |
Q |
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||||||| |||||||||||| |||| | || | ||| |||||| || |||||| ||||||||| |||||| ||||||| ||||||| || | || || |
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| T |
22110174 |
agataaatgggctcaaagccgcgcttatctctgccaaatctgaagtagagcagttgaaatctgcattggatgttgccgagataagataccaagaagaata |
22110273 |
T |
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| Q |
101 |
tatccaaagcacattgcagattagaagtgc |
130 |
Q |
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| T |
22110274 |
catccagagcacattgcagattagaagtgc |
22110303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 40584415 - 40584286
Alignment:
| Q |
1 |
agataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagatatcagaatgagta |
100 |
Q |
| |
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||||||| |||||||||||| |||| | || | ||| |||||| || |||||| ||||||||| |||||| ||||||| ||||||| || | || || |
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| T |
40584415 |
agataaatgggctcaaagccgcgcttatctctgccaaatctgaagtagagcagttgaaatctgcattggatgttgccgagataagataccaagaagaata |
40584316 |
T |
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| Q |
101 |
tatccaaagcacattgcagattagaagtgc |
130 |
Q |
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||||| ||||||||||||||||||||||| |
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| T |
40584315 |
catccagagcacattgcagattagaagtgc |
40584286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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