View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_32 (Length: 236)
Name: NF10658_low_32
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47282142 - 47281913
Alignment:
| Q |
1 |
taaaatgtcctcgcccctttggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaatatgttttttagttttcttgccctttattca |
100 |
Q |
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| T |
47282142 |
taaaatgtcctcgcccctttggtttcctatttgatcaaaacaataaacaaaacttgctaagaagcataatccgttttttagttttcttgccctttattca |
47282043 |
T |
|
| Q |
101 |
tgcaatttgttcagattcagatggactttacgcaggccctttta----aatacctcatcagatgatgcttttgtagcaggagatgctcgaaagttcttgg |
196 |
Q |
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| T |
47282042 |
tgcaatttgttatgattcagatggactttacgcatgcccttttaaattaatacctcatcagatgatgcttttgtagcaggagatactcgaaagttcttgg |
47281943 |
T |
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| Q |
197 |
cagacagctataacaatgatcttgcttctt |
226 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
47281942 |
cagacaactataacaatgatcttgcttctt |
47281913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 41074751 - 41074799
Alignment:
| Q |
21 |
ggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaa |
69 |
Q |
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| T |
41074751 |
ggtttcttatttgatcaaaacaacaaacagaagttgctaagaagcaaaa |
41074799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 50668321 - 50668375
Alignment:
| Q |
15 |
ccctttggtttcctatttgataaaaacaataaacaaaacttgctaagaagcaaaa |
69 |
Q |
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| T |
50668321 |
ccctttggtttcttatttgatcaaaacaatgaacaaaagttgctaagcagcaaaa |
50668375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 50669606 - 50669651
Alignment:
| Q |
15 |
ccctttggtttcctatttgataaaaacaataaacaaaacttgctaa |
60 |
Q |
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|||||||||||| |||||||| ||||||||||||| || ||||||| |
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| T |
50669606 |
ccctttggtttcttatttgatcaaaacaataaacagaagttgctaa |
50669651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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