View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_33 (Length: 236)
Name: NF10658_low_33
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_33 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13448244 - 13448009
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448244 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaag |
13448145 |
T |
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| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448144 |
aaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaatt |
13448045 |
T |
|
| Q |
201 |
caaatgagtattgtctaaattttttcaacttttcct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13448044 |
caaatgagtattgtctaaattttttcaacttttcct |
13448009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13454715 - 13454552
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
13454715 |
gagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaa |
13454616 |
T |
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| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacct |
164 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
13454615 |
aaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgagaaacct |
13454552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 13440081 - 13439919
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
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||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
13440081 |
gagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaag |
13439982 |
T |
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| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
163 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
13439981 |
aaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc |
13439919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 13454571 - 13454501
Alignment:
| Q |
163 |
cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaactttt |
233 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||| ||| ||||| ||| |||||||||||||| |
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| T |
13454571 |
cttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttcaactttt |
13454501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 28385215 - 28385054
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
|
||||||||| | |||| ||||||||||||||| ||||||||||||||||| || | || |||||||||||| ||||| || |||| || |||| || ||| |
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| T |
28385215 |
gagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag |
28385116 |
T |
|
| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
162 |
Q |
| |
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|||| || || ||||||||||||||||| ||||| || |||||||||||||||| ||||||| |
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| T |
28385115 |
aaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac |
28385054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12540566 - 12540413
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
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||||||||| | |||||||||||||| |||||| |||||||||||||||| || |||| ||| |||||| ||||||| || |||| || |||| |||||| |
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| T |
12540566 |
gagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaag |
12540467 |
T |
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| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagat |
154 |
Q |
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|||| || || ||| ||||||||||||| ||||||| |||||| ||||||||| |
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| T |
12540466 |
aaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagat |
12540413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 12641779 - 12641941
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||||||| | | ||||| | || ||||| ||||||||| |||| |||| ||| ||| || ||| |
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| T |
12641779 |
gagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttgaag |
12641878 |
T |
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| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
163 |
Q |
| |
|
|||| || |||||| |||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
12641879 |
aaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc |
12641941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 48965210 - 48965050
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| || || || | ||||| ||||||||||||||| |||| || ||| ||||||| |
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| T |
48965210 |
gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag |
48965111 |
T |
|
| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagaga |
161 |
Q |
| |
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|||| ||||||||| |||| |||||||| || |||||||| || || ||||||| |||||| |
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| T |
48965110 |
aaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga |
48965050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 48961172 - 48961011
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
|
|||||||| || || | ||| |||||||||||||||||||| ||| |||| || | | ||||||||||||||| || || |||||| |||| |||||| |
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|
| T |
48961172 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
48961073 |
T |
|
| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
162 |
Q |
| |
|
||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| ||||||| |
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| T |
48961072 |
taggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac |
48961011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 48967339 - 48967178
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaag |
100 |
Q |
| |
|
||||| ||| |||| |||||||||||| || ||||||||||| || ||||| | || ||||||||| ||||||||||| |||| || ||| |||||| |
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| T |
48967339 |
gagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaag |
48967240 |
T |
|
| Q |
101 |
aagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
162 |
Q |
| |
|
|||| |||| ||||||||||||||| | ||||||||||| || ||||||||| ||||||| |
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|
| T |
48967239 |
aaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac |
48967178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 48958022 - 48957876
Alignment:
| Q |
4 |
aaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaag |
103 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| | |||| | | ||||| |||||| |||||||| |||| || |||| ||||||||| |
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| T |
48958022 |
aaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaag |
48957923 |
T |
|
| Q |
104 |
ggggctcgtcttataataatttgttggctttgattgacgaacttaaa |
150 |
Q |
| |
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| || || ||| |||| ||||||||| |||||||||| || |||||| |
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| T |
48957922 |
gtggatcatctcataacaatttgttgtctttgattgatgatcttaaa |
48957876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 48912659 - 48912746
Alignment:
| Q |
17 |
gattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagg |
104 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||||| | |||||||||||||||||| || ||||||| ||| || ||| ||||||| |
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| T |
48912659 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
48912746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 3417837 - 3417975
Alignment:
| Q |
13 |
aggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgt |
112 |
Q |
| |
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||||||||||||||| || ||||||| |||||| ||| || |||| |||||||||| ||||||| || |||| || ||||||||||||||| || || | |
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| T |
3417837 |
aggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttcct |
3417936 |
T |
|
| Q |
113 |
cttataataatttgttggctttgattgacgaacttaaaa |
151 |
Q |
| |
|
| || |||||||||| ||||||| ||||||||||||| |
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| T |
3417937 |
cacatcataatttgttaactttgatcgacgaacttaaaa |
3417975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6809 - 6852
Alignment:
| Q |
1 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctga |
44 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||||| |
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|
| T |
6809 |
gagaaggctgtgaggagattgatggatggtggtgacgaagctga |
6852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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