View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10658_low_36 (Length: 227)
Name: NF10658_low_36
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_36 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 41345580 - 41345357
Alignment:
| Q |
3 |
gatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41345580 |
gatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgc |
41345481 |
T |
|
| Q |
103 |
gttatttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttgtg |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41345480 |
gttatttctcacatggtca-cctagcaagcgctattttaaatcctcagtttggtcgggaattaaagctcatgtaggcactgtcttgttgaattctttgtg |
41345382 |
T |
|
| Q |
203 |
gatagtaggcaccgaagatcaaata |
227 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
41345381 |
gatagtaggcaccggagatcaaata |
41345357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 29304655 - 29304431
Alignment:
| Q |
3 |
gatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgc |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29304655 |
gatatcaagcctacgcgtttgattaacgaggctttgattcttaaattttcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgc |
29304556 |
T |
|
| Q |
103 |
gttatttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttgtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
29304555 |
gttatttctcacatggtcagcctagcaagcgctgttttaaatcctcggtttggtcgggaattaaagctcatataggcaccgtcgtgttgaattctttgtg |
29304456 |
T |
|
| Q |
203 |
gatagtaggcaccgaagatcaaata |
227 |
Q |
| |
|
|||||||||||||| ||||| |||| |
|
|
| T |
29304455 |
gatagtaggcaccggagatcgaata |
29304431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21463126 - 21463210
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| | ||||||||| | ||||||||||||||||| | |||||||||||||| |
|
|
| T |
21463126 |
tggatatcaagcctacacgtttgattaatgaagcgctaattcttaaactatcttgggatttaattgctacggatactcaatggtc |
21463210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 21811515 - 21811572
Alignment:
| Q |
11 |
gcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgca |
68 |
Q |
| |
|
||||||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
21811515 |
gcctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgca |
21811572 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10610043 - 10609831
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagat |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| || | || |||| |
|
|
| T |
10610043 |
tggatatcaagcctacgcgtttgtttaacgaagctttgattattaaattgtcttgggatttaattgctacagatactcaatggtctaaccttttaaagag |
10609944 |
T |
|
| Q |
101 |
gcgttatttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttg |
200 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||| |||||||| || || ||||||| ||||||||||| ||| || | | ||||||| | ||||||||| |
|
|
| T |
10609943 |
gcgttatttcccaaatggtaagcctagcttgcgttattttaagtcttcggtttggtcaggaattaaagcgcatatatgtaatgtcttggttaattctttg |
10609844 |
T |
|
| Q |
201 |
tggatagtaggca |
213 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
10609843 |
tggatagtgggca |
10609831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20424795 - 20425016
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||| || | || |||| |
|
|
| T |
20424795 |
tggatatcaagcctacgcgtttgattaacgaagctttgattcttaaatattcttgggatttacttgctacagatactcaatggtctaaccttttaaagag |
20424894 |
T |
|
| Q |
101 |
gcgttatttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||| |||||||| || ||||||| ||||||||| || |||| ||||||||| | ||||||||| |
|
|
| T |
20424895 |
gcgttatttctcaaatggtaagcctagcttgcgctactttaaatcgtctgtttggtcaagaattaaagtgtatataggtactgtcttggttaattctttg |
20424994 |
T |
|
| Q |
201 |
tggatagtaggcaccgaagatc |
222 |
Q |
| |
|
|||| ||| |||| ||| |||| |
|
|
| T |
20424995 |
tggacagtgggcagcgatgatc |
20425016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 32300590 - 32300672
Alignment:
| Q |
3 |
gatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| |||||||| || ||| ||||||||||| | |||| || ||||||||||| |
|
|
| T |
32300590 |
gatataaaacctacgcgtttgattaatgaagcattgattctgaagttggcttgggatttattggcaacggacactcaatggtc |
32300672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 10137232 - 10137419
Alignment:
| Q |
21 |
ttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctcacatggtc |
120 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||| || ||||| | |||||||| ||||| |||||| |
|
|
| T |
10137232 |
ttgattaatgaagctttgattattaaattgttttgggatttaattgcagaagatacacaatggtctaacttattcagattgcgttatctctcaaatggtc |
10137331 |
T |
|
| Q |
121 |
agcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttgtggatagt |
208 |
Q |
| |
|
|||| || |||||||||||||| ||||| ||||||| ||| ||||||| ||| |||||| || ||| || | || ||||||||||| |
|
|
| T |
10137332 |
agccaagaaagcgctattttaagtcctcggtttggtcgggtattaaagaacatataggcatagttttgctgcactccttgtggatagt |
10137419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 57433 - 57272
Alignment:
| Q |
6 |
atcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgtt |
105 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||| | || || || ||||| |||||||| |||| ||| | |
|
|
| T |
57433 |
atcaaacctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtctaatttattcaagaggcgat |
57334 |
T |
|
| Q |
106 |
atttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaa |
167 |
Q |
| |
|
||||||| | |||||||| || ||| |||||||||||||| ||||||| ||| |||||| |
|
|
| T |
57333 |
ttttctcaaacggtcagccctccatgcgttattttaaatcctcggtttggtcgggtattaaa |
57272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 14365 - 14530
Alignment:
| Q |
3 |
gatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgc |
102 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||| | || || || ||||| | |||||| ||| || |
|
|
| T |
14365 |
gatatcagacctacgcgattgattaatgaggctttaattctaaaattatcttgggatttaattgcacaggaaacacagtggtctagtttattcaagcagc |
14464 |
T |
|
| Q |
103 |
gttatttctcacatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaag |
168 |
Q |
| |
|
|||||||||| |||||| ||| || |||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
14465 |
tttatttctcaaatggtcggccctccatgcgctattttaaatcctcggtttggtcgggcattaaag |
14530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18027154 - 18027070
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||| | ||| |||||||||| |
|
|
| T |
18027154 |
tggatatcaagcctacgcgtttgattaatgaagcgctaattcttaaattgtcttgggatttacttgctacggattctcaatggtc |
18027070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 1926378 - 1926224
Alignment:
| Q |
13 |
ctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctc |
112 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||| | || | ||||| ||||||| |||| ||| ||||| || |
|
|
| T |
1926378 |
ctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggcaaacatagtggtctcatttattcaagaggcgatatttttc |
1926279 |
T |
|
| Q |
113 |
acatggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaa |
167 |
Q |
| |
|
| | |||||||| || |||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
1926278 |
aaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaa |
1926224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 20375514 - 20375403
Alignment:
| Q |
115 |
atggtcagcctagcaagcgctattttaaatcctcagtttggttgggaattaaagctcatgtaggcactgtcttgttgaattctttgtggatagtaggcac |
214 |
Q |
| |
|
||||| |||||||| ||| |||||||| || | ||||||| ||||||||||| ||| |||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
20375514 |
atggtaagcctagcttgcgttattttaagtcgttggtttggtcaggaattaaagcgcatataggtactgtcttggttaattctttgtggatagtgggcag |
20375415 |
T |
|
| Q |
215 |
cgaagatcaaat |
226 |
Q |
| |
|
|| |||||||| |
|
|
| T |
20375414 |
cggtgatcaaat |
20375403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 14675928 - 14675844
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||| | ||| |||||||||| |
|
|
| T |
14675928 |
tggatatcaagcctacgcgtttgattaatgaagcgctaattcttaaattgtcttgggatttacttgctacggattctcaatggtc |
14675844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 21879563 - 21879417
Alignment:
| Q |
21 |
ttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctcacatggtc |
120 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||||||||||||||||| || || || ||||| |||||||| || | | ||||||||| | |||| |
|
|
| T |
21879563 |
ttgattaacgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctaatttattcaaaagaagatatttctcaaacggtc |
21879464 |
T |
|
| Q |
121 |
agcctagcaagcgctattttaaatcctcagtttggttgggaattaaa |
167 |
Q |
| |
|
|||| || |||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
21879463 |
agccctccatgcgctattttaaatcctcggtttggtcgggtattaaa |
21879417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17831868 - 17831952
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||| |||| | ||| |||||||||| |
|
|
| T |
17831868 |
tggatatcaagcctacgcgcttgattaatgaagcgctaattcttaaactgtcttgggatttacttgctacggattctcaatggtc |
17831952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37238 - 37154
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtc |
85 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||| |||| | ||| |||||||||| |
|
|
| T |
37238 |
tggatatcaagcctacgcgtttgattaatgaagtgcgaattcttaaactgtcttgggatttacttgctatggattctcaatggtc |
37154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25253 - 25187
Alignment:
| Q |
1 |
tggatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgc |
67 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | ||||||||| |||| ||| ||||| |||| |
|
|
| T |
25253 |
tggatatcaagcctacgcgtttgattaatgaagcgctaattcttaaactgtcctggaatttacttgc |
25187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 21292 - 21237
Alignment:
| Q |
13 |
ctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgca |
68 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
21292 |
ctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgca |
21237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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