View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_low_39 (Length: 216)

Name: NF10658_low_39
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_low_39
NF10658_low_39
[»] chr8 (10 HSPs)
chr8 (63-209)||(38613611-38613757)
chr8 (1-66)||(6311097-6311162)
chr8 (1-64)||(7290147-7290211)
chr8 (1-63)||(36979184-36979244)
chr8 (1-72)||(10689373-10689442)
chr8 (1-63)||(18870790-18870849)
chr8 (1-63)||(30655448-30655507)
chr8 (9-63)||(4760314-4760366)
chr8 (1-42)||(39785044-39785086)
chr8 (1-63)||(18853399-18853457)
[»] chr5 (13 HSPs)
chr5 (1-64)||(1457382-1457446)
chr5 (1-63)||(27444771-27444834)
chr5 (1-63)||(27449615-27449678)
chr5 (1-63)||(31180079-31180139)
chr5 (1-63)||(43598525-43598588)
chr5 (1-63)||(43604017-43604080)
chr5 (1-63)||(43609509-43609572)
chr5 (1-46)||(30631227-30631272)
chr5 (1-63)||(43592080-43592143)
chr5 (1-42)||(28807795-28807837)
chr5 (7-63)||(38191983-38192036)
chr5 (7-63)||(38219208-38219261)
chr5 (7-63)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (1-64)||(51520257-51520321)
chr4 (1-42)||(45348038-45348079)
chr4 (1-42)||(45357517-45357558)
chr4 (1-64)||(56146932-56146996)
chr4 (1-63)||(29760449-29760509)
chr4 (1-42)||(9224627-9224668)
chr4 (1-42)||(9229414-9229455)
chr4 (1-63)||(24741748-24741807)
chr4 (1-42)||(3813846-3813888)
chr4 (1-42)||(18855549-18855591)
chr4 (2-42)||(5732486-5732525)
[»] chr7 (9 HSPs)
chr7 (1-65)||(2057763-2057825)
chr7 (1-42)||(24024548-24024589)
chr7 (1-42)||(4866553-4866594)
chr7 (1-42)||(12396735-12396776)
chr7 (1-42)||(12406155-12406196)
chr7 (1-42)||(31109803-31109844)
chr7 (1-63)||(20357778-20357837)
chr7 (7-63)||(1533677-1533730)
chr7 (7-63)||(21645818-21645871)
[»] chr6 (9 HSPs)
chr6 (1-42)||(6438324-6438365)
chr6 (1-42)||(14737797-14737838)
chr6 (1-42)||(14742656-14742697)
chr6 (1-42)||(22010917-22010958)
chr6 (1-42)||(11856795-11856836)
chr6 (1-42)||(28155791-28155832)
chr6 (1-42)||(28184325-28184367)
chr6 (6-63)||(30126030-30126084)
chr6 (7-63)||(5675004-5675057)
[»] chr3 (5 HSPs)
chr3 (1-65)||(7167049-7167111)
chr3 (1-42)||(22173415-22173456)
chr3 (1-63)||(2671817-2671876)
chr3 (2-42)||(18656256-18656295)
chr3 (1-63)||(40373026-40373085)
[»] chr2 (8 HSPs)
chr2 (1-65)||(11099157-11099219)
chr2 (1-42)||(44312844-44312885)
chr2 (7-63)||(25403443-25403496)
chr2 (1-42)||(32246607-32246649)
chr2 (7-63)||(9296638-9296691)
chr2 (7-63)||(25398305-25398358)
chr2 (1-42)||(39812208-39812250)
chr2 (1-63)||(14291295-14291354)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-42)||(35282-35323)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-42)||(9860-9902)
scaffold0355 (1-42)||(101-143)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-42)||(34169-34211)
[»] chr1 (8 HSPs)
chr1 (1-42)||(1055232-1055274)
chr1 (1-42)||(39445322-39445364)
chr1 (1-42)||(41386571-41386613)
chr1 (7-63)||(19359079-19359132)
chr1 (7-63)||(24203001-24203054)
chr1 (1-42)||(25445310-25445352)
chr1 (1-42)||(41398060-41398102)
chr1 (1-42)||(44024093-44024135)
[»] scaffold0188 (1 HSPs)
scaffold0188 (7-63)||(24278-24331)
[»] scaffold0464 (1 HSPs)
scaffold0464 (2-42)||(185-226)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  63 agaagcaaaattcagcagattcaaaccttggcgacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 162  Q
    |||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  163 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 209  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6311162 - 6311097
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaa 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6311162 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7290147 - 7290211
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 64  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  7290147 tatctcttgctccacacatcaatgtttatttcattggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36979244 - 36979184
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  36979244 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10689373 - 10689442
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacagaagcaaaa 72  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||| || ||||||| || |||||    
T  10689373 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18870790 - 18870849
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  18870790 tatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30655507 - 30655448
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  30655507 tatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 4760314 - 4760366
Alignment:
Q  9 gctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||| ||||||||    
T  4760314 gctccacacatctttgttt--ttcattgatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39785044 - 39785086
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  39785044 tatcacttgctccacacatctttggtttatttcattggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18853399 - 18853457
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||    | ||||||||||||||||||||| ||||||||    
T  18853399 tatctcttgctccacacatctttgttt----cgttggtgtgagtttcaaccggattcacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1457382 - 1457446
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1457382 tatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27444834 - 27444771
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27444834 tatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27449678 - 27449615
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  27449678 tatctcttgctccacatatcattgtttatttcattggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31180139 - 31180079
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180139 tatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43598588 - 43598525
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43598588 tatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43604080 - 43604017
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43604080 tatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43609572 - 43609509
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||    
T  43609572 tatctcttgctccacacatcattgtttatttcattggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30631272 - 30631227
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt 46  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||    
T  30631272 tatctcttgctccacacatcattgtttatttcatttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43592143 - 43592080
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaaca 63  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||  ||||||| ||||||||    
T  43592143 tatctcttgctccacacatcattgtttatttcattgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28807795 - 28807837
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  28807795 tatcacttgctccacacatcattggtttatttcattggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 38192036 - 38191983
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38192036 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 38219261 - 38219208
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  38219261 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51520321 - 51520257
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  51520321 tatctcttgctccacacatcattgtttatttcattggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45348038 - 45348079
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45348038 tatcacttgctccacacatcattgtttatttcattggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45357517 - 45357558
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45357517 tatcacttgctccacacatcattgtttatttcattggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 56146932 - 56146996
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagttt-caaccggaatcacaacag 64  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  56146932 tatctcttgctccacacatcattgtttatttcattggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29760509 - 29760449
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  29760509 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9224627 - 9224668
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  9224627 tatctcttgctccacacatcattgtttatttcattggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9229414 - 9229455
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  9229414 tatctcttgctccacacatcattgtttatttcattggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24741807 - 24741748
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  24741807 tatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3813888 - 3813846
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  3813888 tatcacttgctccacacatcattggtttatttcattggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18855591 - 18855549
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  18855591 tatcacttgctccacacatcattggtttatttcattggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 5732525 - 5732486
Alignment:
Q  2 atcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  5732525 atcacttgctccacacatcattgtat-tttcattggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2057825 - 2057763
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 65  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2057825 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24024548 - 24024589
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24024548 tatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4866594 - 4866553
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  4866594 tatctcttgctccacacatcattgtttatttcattggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12396776 - 12396735
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  12396776 tatctcttgctccacacatcattgtttatttcattggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12406196 - 12406155
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  12406196 tatctcttgctccacacatcattgtttatttcattggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31109803 - 31109844
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  31109803 tatcacttgctgcacacatcattgtttatttcattggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20357778 - 20357837
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||    
T  20357778 tatctcttgctccacacatctttgttt---tcattggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 1533677 - 1533730
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  1533677 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 21645871 - 21645818
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  21645871 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6438365 - 6438324
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6438365 tatcacttgctccacacatcattgtttatttcattggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14737797 - 14737838
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14737797 tatcacttgctccacacatcattgtttatttcattggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14742656 - 14742697
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14742656 tatcacttgctccacacatcattgtttatttcattggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22010917 - 22010958
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22010917 tatcacttgctccacacatcattgtttatttcattggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11856836 - 11856795
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  11856836 tatctcttgctccacacatcattgtttatttcattggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28155791 - 28155832
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  28155791 tatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28184367 - 28184325
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  28184367 tatcacttgctccacacatcattggtttatttcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 30126030 - 30126084
Alignment:
Q  6 cttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    ||||||||||||||| ||||||   |||||||||||| ||||||||||| ||||||||    
T  30126030 cttgctccacacatctttgttt---tcattggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 5675004 - 5675057
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  5675004 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7167111 - 7167049
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 65  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  7167111 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22173415 - 22173456
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  22173415 tatctcttgctccacacatcattgtttatttcattggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2671817 - 2671876
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  2671817 tatctcttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 18656295 - 18656256
Alignment:
Q  2 atcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  18656295 atcacttgctccacacatcattgtat-tttcattggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40373026 - 40373085
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||| | ||||||   |||||||||||||||| ||||||| ||||||||    
T  40373026 tatctcttgctccacacacctttgttt---tcattggtgtgagttttaaccggattcacaaca 40373085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11099157 - 11099219
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 65  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||    
T  11099157 tatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44312844 - 44312885
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44312844 tatcacttgctccacacatcattgtttatttcattggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 25403496 - 25403443
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||| ||||||||    
T  25403496 ttgctccacacatctttgttta---cattggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32246649 - 32246607
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32246649 tatcacttgctccacacatcattggtttatttcattggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 9296638 - 9296691
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  9296638 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 25398358 - 25398305
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   |||||||||||||||||||| || ||||||||    
T  25398358 ttgctccacacatctttgttta---cattggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39812208 - 39812250
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  39812208 tatcacttgctccacacatctttggtttatttcattggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14291354 - 14291295
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||| ||||||||||||| | ||||||   |||||||||||||||| ||||||| ||||||||    
T  14291354 tatctcttgctccacacacctttgttt---tcattggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35282 - 35323
Alignment:
Q  1 tatcacttgctccacacatcattgtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  35282 tatctcttgctccacacatcattgtttatttcattggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9860 - 9902
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  9860 tatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 101 - 143
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  101 tatcacttgctccacacatcattggtttatttaattggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34169 - 34211
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  34169 tatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1055232 - 1055274
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1055232 tatcacttgctccacacatcattggtttatttcattggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39445364 - 39445322
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  39445364 tatcacttgctccacacatcattggtttatttcattggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41386613 - 41386571
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41386613 tatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 24203001 - 24203054
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||| ||||||||    
T  24203001 ttgctccacacatctttgttt---tcattggtgtgagttttaaccggattcacaaca 24203054  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25445310 - 25445352
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  25445310 tatcgcttgctccacacatcattggtttatttcattggtgtga 25445352  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41398102 - 41398060
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  41398102 tatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44024093 - 44024135
Alignment:
Q  1 tatcacttgctccacacatcatt-gtttatttcattggtgtga 42  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  44024093 tatcagttgctccacacatcattggtttatttcattggtgtga 44024135  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 24278 - 24331
Alignment:
Q  7 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 63  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  24278 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 24331  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 226 - 185
Alignment:
Q  2 atcacttgctccacacatcattg-tttatttcattggtgtga 42  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  226 atcacttgctccacacatctttggtttatttcattggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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