View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_low_4 (Length: 399)

Name: NF10658_low_4
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_low_4
NF10658_low_4
[»] chr2 (2 HSPs)
chr2 (15-363)||(23379252-23379600)
chr2 (93-225)||(44885752-44885884)
[»] chr3 (9 HSPs)
chr3 (16-386)||(16739820-16740190)
chr3 (93-221)||(49642078-49642206)
chr3 (82-145)||(31661604-31661667)
chr3 (82-145)||(31808608-31808671)
chr3 (82-145)||(31934686-31934749)
chr3 (82-145)||(31972944-31973007)
chr3 (82-145)||(38015693-38015756)
chr3 (93-202)||(19771126-19771235)
chr3 (315-352)||(8565693-8565730)
[»] chr4 (1 HSPs)
chr4 (302-383)||(16582731-16582812)
[»] chr7 (6 HSPs)
chr7 (16-199)||(13015539-13015722)
chr7 (16-160)||(15630628-15630772)
chr7 (93-225)||(17239223-17239355)
chr7 (82-145)||(41600880-41600943)
chr7 (297-386)||(13015353-13015442)
chr7 (313-386)||(15632907-15632980)
[»] chr5 (2 HSPs)
chr5 (16-160)||(2158393-2158537)
chr5 (82-144)||(16084517-16084579)
[»] chr1 (5 HSPs)
chr1 (93-225)||(24082833-24082965)
chr1 (96-224)||(40490565-40490693)
chr1 (82-145)||(21703397-21703460)
chr1 (324-386)||(41116877-41116939)
chr1 (93-193)||(41340358-41340458)
[»] scaffold0252 (1 HSPs)
scaffold0252 (82-135)||(7365-7418)
[»] chr8 (5 HSPs)
chr8 (102-145)||(27978209-27978252)
chr8 (102-145)||(28035478-28035521)
chr8 (18-225)||(14658242-14658449)
chr8 (315-352)||(35284713-35284750)
chr8 (82-142)||(35284480-35284540)
[»] scaffold0011 (1 HSPs)
scaffold0011 (93-225)||(191555-191687)
[»] chr6 (2 HSPs)
chr6 (82-145)||(9958673-9958736)
chr6 (93-225)||(30588447-30588579)
[»] scaffold0414 (1 HSPs)
scaffold0414 (86-135)||(9879-9928)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 23379252 - 23379600
Alignment:
Q  15 acatcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgca 114  Q
    |||||| |||| ||||||||||||||| | |||||||| ||||||| ||| |||| |||| |    |||||||| || |||||||||||||||||| |||    
T  23379252 acatcatctacggctgccattttttctttgcttgaaaatttgtcggttgaactttcacaatgtttaacaactgtaatttggagcatttggaaacactgca 23379351  T
Q  115 atcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggt 214  Q
    | |||  ||| |||||||||||||||||||||||||||||    || ||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||    
T  23379352 accttcaagtatgggaagatgtcacagaaaccagcgctacaacagttgaacgagcccggaatatggttcttgattggcagctagctaacactcccgaagt 23379451  T
Q  215 tcttgcatcaaatagtcaacaccaaccgtaattatcaattgaggggggaccttccacttcggctcccctaaatgtccgagcgtggcagcctcctatgccg 314  Q
     | |||||||| ||||||| |||| |||  | | ||| |||||||||||||| ||||||||| | | |  |||||| ||  |||| |||||||| |||||    
T  23379452 gcctgcatcaactagtcaaaaccagccgacactgtcacttgaggggggacctaccacttcggtttcacccaatgtctgaaagtggtagcctcctctgccg 23379551  T
Q  315 ggtagatataaatgcaatattgacaccgcgttctcatcctccctcaacc 363  Q
    |||||||||||||| || |||||| | || ||||| |||||||||||||    
T  23379552 ggtagatataaatgtaacattgacgctgctttctcctcctccctcaacc 23379600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 44885752 - 44885884
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||| ||||    
T  44885752 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgactggc 44885851  T
Q  193 agctagctaacactcccgaggttcttgcatcaa 225  Q
    || | ||||| ||||| | ||||||||||||||    
T  44885852 agttggctaatactcctgcggttcttgcatcaa 44885884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 16740190 - 16739820
Alignment:
Q  16 catcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaa 115  Q
    ||||| ||||| |||| ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || |||||||||||||||||||||||    
T  16740190 catcatctacaactgcaattttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccgcaa 16740091  T
Q  116 tcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggtt 215  Q
    |||| | || ||||| |||||  ||||||  |||||||||||||| ||  ||||| | |  |||||| ||||||||||| |||| ||   ||| | ||      
T  16740090 tcttcgcgtctgggacgatgtttcagaaatgagcgctacggtggttgaccgagcccgaagcatggttgttgattggcagttagccaatgatccagcggcc 16739991  T
Q  216 cttgcatcaaatagtcaacaccaaccgtaattatcaattgaggggggaccttccacttcggctcccctaaatgtccgagcgtggcagcctcctatgccgg 315  Q
    || ||||| || |||||||||||| ||  | || |  ||||||||||||| ||||||||||  |||| || |   |   | ||||  |||||| | ||||    
T  16739990 ctagcatctaacagtcaacaccaatcgccaataccctttgaggggggaccgtccacttcggggccccaaattacacattcttggcgacctcctcttccgg 16739891  T
Q  316 gtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 386  Q
    || ||||||||||||| |||||    |||||||| |||||||||||||  ||||||||||| |||||||||    
T  16739890 gtcgatataaatgcaacattgatgttgcgttctcttcctccctcaaccacactggtattgatatttgtgtc 16739820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 49642078 - 49642206
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||||||||    
T  49642078 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggc 49642177  T
Q  193 agctagctaacactcccgaggttcttgca 221  Q
    | || ||||| ||||  | ||||||||||    
T  49642178 aactggctaatactcttgcggttcttgca 49642206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 31661667 - 31661604
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31661667 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 31808608 - 31808671
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    |||||||||| |||||| | ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  31808608 caactgtcatttggagcttatggaaacaccgtaatcttagagtttgggacgatgttacagaaac 31808671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 31934686 - 31934749
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31934686 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 31972944 - 31973007
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||||    
T  31972944 caactgtcatgtggagcttatggaaacaccgcaatcttcgagtttgggacgatgccactgaaac 31973007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 38015756 - 38015693
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38015756 caactgtaatatggagtattttgaaacaccgcaatcttagagtttgggaagatgtaatagaaac 38015693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 19771235 - 19771126
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||| ||||||||||||| |||||||||||||| || ||||  |  ||| | || |||||||| || ||||| || |||||| ||||| |||||||||    
T  19771235 tggagcctttggaaacaccgtaatcttagagtttgagatgatgctatggaagctagtgctacggttgttgaatgtgctaggaatttggttgttgattggc 19771136  T
Q  193 agctagctaa 202  Q
    | || |||||    
T  19771135 aactggctaa 19771126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 8565693 - 8565730
Alignment:
Q  315 ggtagatataaatgcaatattgacaccgcgttctcatc 352  Q
    |||||||||||||||||||||||| | |||||||||||    
T  8565693 ggtagatataaatgcaatattgacgcagcgttctcatc 8565730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 16582812 - 16582731
Alignment:
Q  302 gcctcctatgccgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgt 383  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  16582812 gcctcctatgccaggtagatataaatgcaatattgacgccgcgttctcatcctccctcaatcgaactggtattgaaatttgt 16582731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 13015722 - 13015539
Alignment:
Q  16 catcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaa 115  Q
    ||||| |||||||| | ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || ||||||||||||||||||| |||    
T  13015722 catcatctacagctacaattttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccacaa 13015623  T
Q  116 tcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagc 199  Q
    |||| | || ||||| |||||  ||||||| ||||||| |||||| ||  ||||| | |  |||||| ||||||||||| ||||    
T  13015622 tcttcgcgtctgggatgatgtttcagaaacaagcgctatggtggttgaccgagcccgaagcatggttgttgattggcagttagc 13015539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 15630628 - 15630772
Alignment:
Q  16 catcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaa 115  Q
    ||||| |||||||||| ||||||||| | || |||| ||||| |  ||| |||| |||||||| |||||| || || ||||||||||||||||||||| |    
T  15630628 catcatctacagctgcaattttttctttgctcgaaaccttgttgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccgcga 15630727  T
Q  116 tcttagagtttgggaagatgtcacagaaaccagcgctacggtggt 160  Q
    |||| |  | ||||| |||||  ||||||| ||||||||||||||    
T  15630728 tcttcgcatctgggacgatgtttcagaaacgagcgctacggtggt 15630772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 17239355 - 17239223
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||||||||||||||||| || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||  |||||||||    
T  17239355 tggagcatttggaaacaccggaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggc 17239256  T
Q  193 agctagctaacactcccgaggttcttgcatcaa 225  Q
    | || ||||| ||||  | ||||||||||||||    
T  17239255 aactggctaatactcatgcggttcttgcatcaa 17239223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 41600880 - 41600943
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||| ||| ||||    
T  41600880 caactgtcatgtggagcttatggaaacactgcaatcttagagtttgggacgatgttacaaaaac 41600943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 386
Target Start/End: Complemental strand, 13015442 - 13015353
Alignment:
Q  297 tggcagcctcctatgccgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 386  Q
    ||||| |||||| | |||||| ||||||||||||| |||||    |||||||| |||||||||||||| ||||||||||  |||||||||    
T  13015442 tggcaacctcctcttccgggtcgatataaatgcaacattgatgttgcgttctcttcctccctcaaccgcactggtattggtatttgtgtc 13015353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 15632907 - 15632980
Alignment:
Q  313 cgggtagatataaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 386  Q
    ||||| ||||||||||||| |||||  | |||||||| |||||||||||||  ||||||||||  |||||||||    
T  15632907 cgggtcgatataaatgcaacattgatgctgcgttctcttcctccctcaaccacactggtattggtatttgtgtc 15632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 2158537 - 2158393
Alignment:
Q  16 catcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaa 115  Q
    ||||| |||||| ||| ||||||||| | ||||||| |||||||  ||| |||| |||||||| |||||| || || |||||||||||||||||||| ||    
T  2158537 catcatctacagttgcaattttttctttgcttgaaaccttgtcgattgaactttcacaacgactgacaaccgtaatatggagcatttggaaacaccggaa 2158438  T
Q  116 tcttagagtttgggaagatgtcacagaaaccagcgctacggtggt 160  Q
    |||| | || |||||  ||||  || |||| ||||||||||||||    
T  2158437 tcttcgcgtctgggacaatgtttcaaaaacgagcgctacggtggt 2158393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 16084517 - 16084579
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaa 144  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||    
T  16084517 caactgtcatgtggagcttatggaaacaccgcaatcttagagtttgggacgatgttacagaaa 16084579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 24082833 - 24082965
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||| ||||||||||||  || || |||||||||||  |||||||||||||||| || ||||| |||||  | || || ||||||||| |||||||||    
T  24082833 tggagcctttggaaacaccagaacctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggttgttgattggc 24082932  T
Q  193 agctagctaacactcccgaggttcttgcatcaa 225  Q
    | || ||||| |||||   ||||||||||||||    
T  24082933 aactggctaatactcctacggttcttgcatcaa 24082965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 40490693 - 40490565
Alignment:
Q  96 agcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagc 195  Q
    ||||||||||||||||| || |||||||||||||| ||||| |  |||||||| |||  ||| ||||| || || ||||| |||||  ||||||| ||      
T  40490693 agcatttggaaacaccgtaaccttagagtttgggatgatgttatggaaaccagtgcttaggttgtggagtgtgctaggaaaatggtcgttgattgacatt 40490594  T
Q  196 tagctaacactcccgaggttcttgcatca 224  Q
    | |||||||||||||  | ||||||||||    
T  40490593 tggctaacactcccgtcgctcttgcatca 40490565  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 21703460 - 21703397
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||    |||||||||||||||||||||||||| || ||||| ||||||||    
T  21703460 caactgtcatgtggagttgatggaaacaccgcaatcttagagtttgtgacgatgttacagaaac 21703397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 41116877 - 41116939
Alignment:
Q  324 aaatgcaatattgacaccgcgttctcatcctccctcaaccgaactggtattgaaatttgtgtc 386  Q
    |||||||| |||||  |||||||||| |||||||||||||| ||||||||||  |||||||||    
T  41116877 aaatgcaacattgatgccgcgttctcttcctccctcaaccgcactggtattggtatttgtgtc 41116939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 41340358 - 41340458
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||| ||||||| ||||| |||||||||||||| || | ||| |||||| | || |||||||| || ||| | || |||||| || || |||||||||    
T  41340358 tggagcctttggaagcaccgtaatcttagagtttgagatgttgttacagaagcaagtgctacggttgttgaacgtgctaggaatctgtttgttgattggc 41340457  T
Q  193 a 193  Q
    |    
T  41340458 a 41340458  T

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Target: scaffold0252 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 7365 - 7418
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatg 135  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||| ||||    
T  7365 caactgtcatgtggagcttatggaaacaccacaatcttagagtttgggacgatg 7418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 27978209 - 27978252
Alignment:
Q  102 tggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  27978209 tggaaacaccgcaatcttagagtttgggaagatgttacaaaaac 27978252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 28035478 - 28035521
Alignment:
Q  102 tggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  28035478 tggaaacaccgcaatcttagagtttgggaagatgttacaaaaac 28035521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 14658449 - 14658242
Alignment:
Q  18 tcaactacagctgccattttttctatacttgaaaacttgtcggctgatcttttacaacgacggacaactgtcatgtggagcatttggaaacaccgcaatc 117  Q
    |||||||| | ||| ||||||||  | |||||||| || || | |||||||  |||||||  || |||||| || ||||| || |||||||| || ||||    
T  14658449 tcaactacggatgctattttttcgttgcttgaaaatttatctgttgatcttgcacaacgattgataactgtgatttggagtatctggaaacatcgtaatc 14658350  T
Q  118 ttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggcagctagctaacactcccgaggttct 217  Q
    |||  |||| ||| ||||| | | |||| || ||||| |||| |||| |||| ||||| |||||  | ||||||||| | |||||||| |||   |||||    
T  14658349 ttaaggttttggatgatgtaataaaaactagtgctacagtggaggaacgagctaggaacatggtcgtagattggcagttggctaacacccccacagttct 14658250  T
Q  218 tgcatcaa 225  Q
    ||||||||    
T  14658249 tgcatcaa 14658242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 35284713 - 35284750
Alignment:
Q  315 ggtagatataaatgcaatattgacaccgcgttctcatc 352  Q
    |||||||||||||||||||||||| | |||||||||||    
T  35284713 ggtagatataaatgcaatattgacgcagcgttctcatc 35284750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 35284480 - 35284540
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacaga 142  Q
    |||| ||||| |||||  ||||||||||||| |||||| | |||||||||||||| |||||    
T  35284480 caacggtcatatggagtctttggaaacaccgtaatcttcgtgtttgggaagatgttacaga 35284540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 191687 - 191555
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||||||||||||||| | || || |||||||| ||  |||||| |||||| ||  | ||||| |||||  | || || ||||||||  ||||||| |    
T  191687 tggagcatttggaaacacaggaacctcagagtttgcgataatgtcatagaaactagtacaacggtagtggagcgtgctagaaatatggtcgttgattgtc 191588  T
Q  193 agctagctaacactcccgaggttcttgcatcaa 225  Q
    | |||||||| ||||| | ||||||||||||||    
T  191587 aactagctaatactcctgtggttcttgcatcaa 191555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 9958673 - 9958736
Alignment:
Q  82 caactgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaac 145  Q
    |||||||||| |||||| | ||||||||| | ||||||||||||| ||| ||||| ||||||||    
T  9958673 caactgtcatatggagcttatggaaacactgtaatcttagagtttaggacgatgttacagaaac 9958736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 30588447 - 30588579
Alignment:
Q  93 tggagcatttggaaacaccgcaatcttagagtttgggaagatgtcacagaaaccagcgctacggtggtggaatgagccaggaatatggttattgattggc 192  Q
    |||||||||||||||||||  || || |||||||||||  |||||| |||||| || || || || ||||| || || || ||||||||  |||||||      
T  30588447 tggagcatttggaaacaccaaaacctcagagtttgggataatgtcatagaaactagtgcaacagtagtggagtgtgctagaaatatggtcgttgattgaa 30588546  T
Q  193 agctagctaacactcccgaggttcttgcatcaa 225  Q
    | || ||||| ||||  | ||||||||||||||    
T  30588547 aactggctaatactcatgtggttcttgcatcaa 30588579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 9928 - 9879
Alignment:
Q  86 tgtcatgtggagcatttggaaacaccgcaatcttagagtttgggaagatg 135  Q
    ||||||||||||| | ||||||||||| |||||| |||||||||| ||||    
T  9928 tgtcatgtggagcttatggaaacaccgaaatcttcgagtttgggacgatg 9879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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