View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_40 (Length: 216)
Name: NF10658_low_40
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27560616 - 27560416
Alignment:
| Q |
1 |
ccagtcccgggtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccg |
100 |
Q |
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| T |
27560616 |
ccagtcccgggtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccg |
27560517 |
T |
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| Q |
101 |
gttttgtaaggcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttagacctctttgaattgaatgacttcaaatatcatg |
200 |
Q |
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| T |
27560516 |
gttttgtaaggcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgacttcaaatatcatg |
27560417 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
27560416 |
t |
27560416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 36668128 - 36667950
Alignment:
| Q |
11 |
gtgtgtttgagagtctaacgttggatgagatagggtctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaag |
110 |
Q |
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| T |
36668128 |
gtgtgtttgagagtctaacgtttgatgcgatttggtctgaaaacatatttataattgttgggaagtcatcactcatcaccttacaggccggttttgtaag |
36668029 |
T |
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| Q |
111 |
gcttgaattaaatttgaagagttacctactaaacttgaataccttttgttgatttagacctctttgaattgaatgacttca |
191 |
Q |
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| T |
36668028 |
ggttgagttaattttga--agttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgacttca |
36667950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 29410043 - 29409974
Alignment:
| Q |
47 |
ctgaaaacatatttataattggtgggcagtcatcacttatcaccttacaagccggttttgtaaggcttga |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||| | || | ||||||||||||||||||| |||| |
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| T |
29410043 |
ctgaaaacatatttataatcggtgggcagtcatcactcaggacttcacaagccggttttgtaagggttga |
29409974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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