View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10658_low_42 (Length: 202)

Name: NF10658_low_42
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10658_low_42
NF10658_low_42
[»] chr2 (3 HSPs)
chr2 (1-188)||(28782815-28783002)
chr2 (77-188)||(28741995-28742106)
chr2 (77-128)||(28699422-28699473)
[»] chr8 (6 HSPs)
chr8 (77-155)||(2034784-2034862)
chr8 (95-157)||(2055874-2055936)
chr8 (77-128)||(2048105-2048156)
chr8 (77-128)||(10769513-10769564)
chr8 (95-128)||(2059078-2059111)
chr8 (96-128)||(2052018-2052050)
[»] chr4 (1 HSPs)
chr4 (77-128)||(48904896-48904947)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 28783002 - 28782815
Alignment:
Q  1 ggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaaccaatacggacctataaaagaatttttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783002 ggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaaccaatacggacctataaaagaatttttatca 28782903  T
Q  101 gaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggattgatgggatctctgctc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782902 gaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggattgatgggatctctgctc 28782815  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 28742106 - 28741995
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaagggattgatg 176  Q
    ||||||||||||||| |||||||||||||||| ||||| | ||| | |||||  ||| || |||| | |||||||||||||||| |||||||| ||||||    
T  28742106 ggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccacttttacagattttgtagcctactacaatgcaaaagggcttgatg 28742007  T
Q  177 ggatctctgctc 188  Q
    | ||||| ||||    
T  28742006 gcatctcagctc 28741995  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 28699473 - 28699422
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 128  Q
    |||||||||| |||||| ||||||||| |||| ||||||| |||||||||||    
T  28699473 ggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaa 28699422  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 2034784 - 2034862
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctact 155  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||| ||||| |||  |||| || |||||||| ||||    
T  2034784 ggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttact 2034862  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 2055874 - 2055936
Alignment:
Q  95 ttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactac 157  Q
    |||||||||||||||||||| |||||||||||||  ||| || | || |||||||||||||||    
T  2055874 ttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactac 2055936  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 2048105 - 2048156
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 128  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  2048105 ggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaa 2048156  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 10769513 - 10769564
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 128  Q
    ||||||||||| ||| | |||||||||||||||||||||| ||||| |||||    
T  10769513 ggacctataaaggaactattatcagaagacaatcctcccatatacagagaaa 10769564  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 2059078 - 2059111
Alignment:
Q  95 ttatcagaagacaatcctcccaaatacaaagaaa 128  Q
    |||||||||||||||||||||||||||| |||||    
T  2059078 ttatcagaagacaatcctcccaaatacagagaaa 2059111  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 2052018 - 2052050
Alignment:
Q  96 tatcagaagacaatcctcccaaatacaaagaaa 128  Q
    ||||||||||||||||||||||||||| |||||    
T  2052018 tatcagaagacaatcctcccaaatacagagaaa 2052050  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 48904947 - 48904896
Alignment:
Q  77 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 128  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  48904947 ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa 48904896  T

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