View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_5 (Length: 387)
Name: NF10658_low_5
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 27 - 377
Target Start/End: Original strand, 3883965 - 3884315
Alignment:
| Q |
27 |
aggctttgtctgaacagaggaagcaggttcacactgaatcaaagaaaggacacagttcaataatgttcttgctcttcttatagccaataagaactctcca |
126 |
Q |
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| T |
3883965 |
aggctttgtctgaacagaggaagcaggttcacactgaatcaaagaaaggacacagttcaataatgttcttgctcttcttatagccaataagaactctcca |
3884064 |
T |
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| Q |
127 |
cgtcgcaatattaggtttcactcaatgtcaccattgctgtctaatcaatcaaagattcaaagattttacatgttacaacgtaggtgttgaccttatttat |
226 |
Q |
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| T |
3884065 |
cgtggcaatattaggtttcactcaatgtcaccattgctgtctaatcaatcaaagattcaaagattttacatgttacaacgtaggtgttgaccttatttat |
3884164 |
T |
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| Q |
227 |
atatgattcaatgtccaccgtttgatcaatgaagttgttgtctagtctaattctagtgaacgtgtgtgagctgtggcatgtgggcatgtatctttatgct |
326 |
Q |
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| T |
3884165 |
atatgattcaatgtccaccgtttgatcaatgaagttgttgtctagtctaattctagtgaacgtgtgtgagctgtggcatgtgggcatgcatctttatgct |
3884264 |
T |
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| Q |
327 |
aaatcaattattattttccttgaatggaaagggtttagttagagttgatgt |
377 |
Q |
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| T |
3884265 |
aaatcaattattattttccttgaatggaaagggtttagttagagttgatgt |
3884315 |
T |
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