View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_7 (Length: 353)
Name: NF10658_low_7
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 28 - 337
Target Start/End: Original strand, 46995167 - 46995476
Alignment:
| Q |
28 |
cacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgca |
127 |
Q |
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| T |
46995167 |
cacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgca |
46995266 |
T |
|
| Q |
128 |
atagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaat |
227 |
Q |
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| T |
46995267 |
atagctagatgaatcttccatgatgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattcccaaaat |
46995366 |
T |
|
| Q |
228 |
attccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttataga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995367 |
attccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttataga |
46995466 |
T |
|
| Q |
328 |
tctccaaact |
337 |
Q |
| |
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|||||||||| |
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| T |
46995467 |
tctccaaact |
46995476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 122 - 337
Target Start/End: Original strand, 46980447 - 46980662
Alignment:
| Q |
122 |
tttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcc |
221 |
Q |
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| T |
46980447 |
tttgcaatagccacatgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattcc |
46980546 |
T |
|
| Q |
222 |
caaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagt |
321 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| || |||| |
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| T |
46980547 |
caaaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatgagt |
46980646 |
T |
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| Q |
322 |
tatagatctccaaact |
337 |
Q |
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|||||||||||||||| |
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| T |
46980647 |
tatagatctccaaact |
46980662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 134 - 337
Target Start/End: Original strand, 46974470 - 46974673
Alignment:
| Q |
134 |
agatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattcct |
233 |
Q |
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| T |
46974470 |
agatgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattcccaaaatattcct |
46974569 |
T |
|
| Q |
234 |
taggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctcca |
333 |
Q |
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| ||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| ||||||||||||||||||| |
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| T |
46974570 |
tcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacgagttatagatctcca |
46974669 |
T |
|
| Q |
334 |
aact |
337 |
Q |
| |
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|||| |
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| T |
46974670 |
aact |
46974673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 46997514 - 46997689
Alignment:
| Q |
115 |
atcatattttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaact |
214 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| ||||||| |||| |||||||| || ||| |||||||||| |||||||| || | |
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| T |
46997514 |
atcataatttgcaatagccaggtgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatg |
46997613 |
T |
|
| Q |
215 |
gaattcccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttc |
290 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
46997614 |
gaattcccaaaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttc |
46997689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 337
Target Start/End: Original strand, 47001187 - 47001399
Alignment:
| Q |
125 |
gcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaa |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||||||||||| | ||||| | || |||||||||| |
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| T |
47001187 |
gcaatagccagatgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattcccaa |
47001286 |
T |
|
| Q |
225 |
aatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttat |
324 |
Q |
| |
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||||||| || ||||||| |||||| ||||| ||||||||||||| || ||| || ||||| ||||| ||| | ||| || ||| |||||||||| |
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| T |
47001287 |
aatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacgagttat |
47001386 |
T |
|
| Q |
325 |
agatctccaaact |
337 |
Q |
| |
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||||||||||||| |
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| T |
47001387 |
agatctccaaact |
47001399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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