View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10658_low_9 (Length: 350)
Name: NF10658_low_9
Description: NF10658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10658_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 40480759 - 40480427
Alignment:
| Q |
17 |
agacctatactacgtaaggaggggggaatcaaaagaaacatttcatttaggaaaatttgtttcatttgaaaagttacaagagtctatcttagcacacata |
116 |
Q |
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| T |
40480759 |
agacctatactacgtaaggaggggggaatcaaaagaaacatttcatttaggaaaatttgtttcatttgaaaagttacaagagtctatcttagcacacata |
40480660 |
T |
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| Q |
117 |
catatctacaactgttaattttacaactttatatataccaaaacctggtaattgacattacaactcaggttagaagagcgacaagataatgaagaatttg |
216 |
Q |
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| T |
40480659 |
catatctacaactgttaattttacaactttata----ccaaaacctggtaattgacattaaaactcgggttagaagagcaacaagataatgaagaatttg |
40480564 |
T |
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| Q |
217 |
aaactggactgtgtttgtgactcagtggaaaactgcaacccacaaagcttatatcatccacaacttgtgaagcctctatttccataagtgcctcac---n |
313 |
Q |
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| T |
40480563 |
aaactggactgtgtttgtgactcagtggaaaactgcaacccacaaagcttatatcatccacaacttgtgaagcctctatttccataagtgcctcacaaaa |
40480464 |
T |
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| Q |
314 |
nnnnnnttcaacgtcacaaggaagccatagaggacca |
350 |
Q |
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| T |
40480463 |
aaataattcaacgtcacaaggaagccatagaggacca |
40480427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 40466512 - 40466401
Alignment:
| Q |
150 |
tataccaaaacctggtaattgacattacaactcaggttagaagagcgacaagataatgaagaatttgaaactggactgtgtttgtgactcagtggaaaac |
249 |
Q |
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| T |
40466512 |
tataccaaaatctcgtaattggcaacgcaactcaggttagaggagcgacaagacaatgaagaatgagaaa-tgggttgtgtttgtgaacaattggaaaat |
40466414 |
T |
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| Q |
250 |
tgcaacccacaaa |
262 |
Q |
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| T |
40466413 |
tgcaacccacaaa |
40466401 |
T |
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