View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10659_low_10 (Length: 240)
Name: NF10659_low_10
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_10 |
 | |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0642 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 7027 - 6803
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttt-ccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
7027 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
6928 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6927 |
gtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
6828 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
6827 |
acagtcttaacattttagacccttt |
6803 |
T |
|
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Target: scaffold0345 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 16940 - 16716
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttt-ccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
16940 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
16841 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16840 |
gtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
16741 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
16740 |
acagtcttaacattttagacccttt |
16716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 22042 - 22266
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttt-ttccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
22042 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
22141 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22142 |
gtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
22241 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
22242 |
acagtcttaacattttagacccttt |
22266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 50924 - 51148
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttt-ttccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
50924 |
ctttgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
51023 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51024 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
51123 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
51124 |
acagtcttgacattttagactcttt |
51148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44498644 - 44498420
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttt-ccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
44498644 |
ctttgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
44498545 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498544 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
44498445 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
44498444 |
acagtcttaacattttagacccttt |
44498420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 3381243 - 3381022
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatctttttt-ccactaattttctatcagtaggaatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
3381243 |
ctttgaatcttcaatcacgatccatggcattttaggactc---gaggtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaa |
3381147 |
T |
|
| Q |
101 |
gtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc- |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381146 |
gtgcttctgaagttctgatatgtgtttggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttccc |
3381047 |
T |
|
| Q |
200 |
-cagtcttgacattttagacccttt |
223 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
3381046 |
acagtcttgacattttagtcccttt |
3381022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 15709118 - 15708959
Alignment:
| Q |
66 |
ttttttccactaattttctatcagtaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcac |
165 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709118 |
ttttttccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcac |
15709019 |
T |
|
| Q |
166 |
cttgagtatgcacaatccttctttgcttggttcc--cagtcttgacattttagacccttt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
15709018 |
cttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagacccttt |
15708959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 26795723 - 26795835
Alignment:
| Q |
113 |
ttctgatatgtgtatggcagttaaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcc--cagtcttgaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26795723 |
ttctgatatgtgtatggcagttaaaacctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgaca |
26795822 |
T |
|
| Q |
211 |
ttttagacccttt |
223 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
26795823 |
ttttggacccttt |
26795835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 30112062 - 30112170
Alignment:
| Q |
2 |
ctttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgcatttcagatcttttttccactaattttctatcagtaggaatccaag |
101 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30112062 |
ctttgaatcttcaatcttgatgcatgacattttagaactctttggagtggatgcattttagatcttttttccactaattttctatcagcaggaatccaag |
30112161 |
T |
|
| Q |
102 |
tgcttctga |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
30112162 |
tgcttctga |
30112170 |
T |
|
Back To:
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