View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10659_low_11 (Length: 239)

Name: NF10659_low_11
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10659_low_11
NF10659_low_11
[»] chr5 (11 HSPs)
chr5 (1-224)||(16397225-16397448)
chr5 (1-224)||(15083503-15083726)
chr5 (7-224)||(16403817-16404034)
chr5 (4-220)||(15452769-15452985)
chr5 (1-174)||(17928198-17928371)
chr5 (1-224)||(15331733-15331957)
chr5 (7-224)||(15428930-15429147)
chr5 (25-175)||(15336234-15336384)
chr5 (23-224)||(15357827-15358028)
chr5 (25-224)||(15347558-15347757)
chr5 (69-208)||(16414566-16414705)
[»] chr3 (1 HSPs)
chr3 (25-195)||(8187687-8187857)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16397448 - 16397225
Alignment:
Q  1 aagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16397448 aagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaatgacaaacaagagaattggcaaagattgaaatctgta 16397349  T
Q  101 ttggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16397348 ttggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggc 16397249  T
Q  201 tatctgacgaagattgttgggaat 224  Q
    ||||||||||||||||||||||||    
T  16397248 tatctgacgaagattgttgggaat 16397225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15083726 - 15083503
Alignment:
Q  1 aagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgta 100  Q
    ||||| ||||||| ||||||| | | |||||||||  |||||||| ||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||||    
T  15083726 aagaagacttcaacatctactacaaggaaaaagatttttgcttgtattggatgacgtttgggacgataaacaagagaattggcagagattgagatctgta 15083627  T
Q  101 ttggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggc 200  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||  |||||  |||| | |     
T  15083626 ttggcttgtggaggaaagggtgcttcaattttggtcactactcgtcttgcaaaggtagcagaaatcatgggaacaatacctccacatgatatatcgaagt 15083527  T
Q  201 tatctgacgaagattgttgggaat 224  Q
    |||| ||||| |||||||||||||    
T  15083526 tatccgacgaggattgttgggaat 15083503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 16404034 - 16403817
Alignment:
Q  7 acttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggct 106  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||| ||||||  |||||||||| | ||||||||    
T  16404034 acttcaagttctacttcgaagaaaaagatatttgcttgttttggatgacttgtggaaccaaaaacaagagtattggctgagattgaaatttctattggct 16403935  T
Q  107 tgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggctatctg 206  Q
    ||||| ||||| ||  ||||||||||||||||||| ||||||  ||| ||||| ||||||||||| ||| | |||| |||||||||||| ||||||||||    
T  16403934 tgtggtggaaagggtacttcaattttggtcactactcgtcttttaaatgtagccaaaatcatggggacagtgcctcctcatgaattatctaggctatctg 16403835  T
Q  207 acgaagattgttgggaat 224  Q
    |  |||| ||||||||||    
T  16403834 ataaagactgttgggaat 16403817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 15452769 - 15452985
Alignment:
Q  4 aaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattg 103  Q
    |||||||||| |  ||||||| | ||||||||| |||||  |||||||||| |||||||| || ||||||||||| ||| |    ||||||||| |||||    
T  15452769 aaaacttcaaaaggtacttcgtacaaaaagatatttgctaattttggatgatgtgtggaatgataaacaagagaaatggtatgatttgaaatctctattg 15452868  T
Q  104 gcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggctat 203  Q
    | |||||||||||| ||  ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||| |||| |||||| |||||||||||||    
T  15452869 gtttgtggaggaaagggttcttcagttttggtcactacccgtcttgcaaaggtaggacaaatcatgggaacaatgcctcttcatgatttatcaaggctat 15452968  T
Q  204 ctgacgaagattgttgg 220  Q
    ||||| |||||||||||    
T  15452969 ctgacaaagattgttgg 15452985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 17928371 - 17928198
Alignment:
Q  1 aagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgta 100  Q
    ||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||  ||||| | ||  |||||||||||||||  |  ||||| ||||||    
T  17928371 aagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggctgaagttgaagtctgta 17928272  T
Q  101 ttggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaac 174  Q
    |||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| |||||||||||||    
T  17928271 ttggcttgtggaggaaaaggtgcttcgattttggtcactacacggcttccaaaggtagcagaaatcatgggaac 17928198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15331957 - 15331733
Alignment:
Q  1 aagaaaacttcaa-gatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgt 99  Q
    ||||||||||||| |||||| | | |||||||| ||| ||||||||||| ||||| |||||||| || ||||||||||| ||||| |  ||||||||| |    
T  15331957 aagaaaacttcaaagatctattgcaaagaaaaaaatatttgcttgttttagatgatgtgtggaatgaaaaacaagagaaatggcacaagttgaaatcttt 15331858  T
Q  100 attggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaagg 199  Q
     ||||||||||||||||| || |||||| | ||||||||||| ||||||  |||||||||| |||||||||||||||| |||| |  |||| |||||| |    
T  15331857 gttggcttgtggaggaaagggtgcttcagtattggtcactactcgtcttgaaaaggtagcagaaatcatgggaacaattcctccttttgaagtatcaaag 15331758  T
Q  200 ctatctgacgaagattgttgggaat 224  Q
    |||||||| | ||||||||||||||    
T  15331757 ctatctgatgtagattgttgggaat 15331733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 15428930 - 15429147
Alignment:
Q  7 acttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggct 106  Q
    ||||||||| || |||| | |||||||||  |||||||| ||||| || || ||| |||  ||||||||||||||||||| ||||| |||||| ||||||    
T  15428930 acttcaagacctgcttcaaggaaaaagatttttgcttgtattggacgatgtatgggacgttaaacaagagaattggcaaaaattgagatctgttttggct 15429029  T
Q  107 tgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggctatctg 206  Q
    ||| ||||||| ||  ||||||||||||||||||| ||||||   ||||||||| |||||||| ||||||||||||  |||||  |||| | ||||||||    
T  15429030 tgtagaggaaagggttcttcaattttggtcactactcgtcttttgaaggtagcagaaatcatgcgaacaatacctccacatgatatatcgaagctatctg 15429129  T
Q  207 acgaagattgttgggaat 224  Q
    ||||||||||||||||||    
T  15429130 acgaagattgttgggaat 15429147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 15336384 - 15336234
Alignment:
Q  25 aagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcgct 124  Q
    |||||||||||| |||||||| |||||||| |||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||| || || |||    
T  15336384 aagaaaaagatatttgcttgtgttggatgatgtgtgggacgacaaatcagagaattggcaaagattgagatctgtattggcttgtggaggcaagggtgct 15336285  T
Q  125 tcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaaca 175  Q
    || ||||| || || || || |||||||||||||||  || ||||||||||    
T  15336284 tcgattttagtaaccactcgccttccaaaggtagcagcaaccatgggaaca 15336234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 15358028 - 15357827
Alignment:
Q  23 cgaagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcg 122  Q
    |||||||||||||| ||||| || |||||||| || ||| | ||   ||||||||||||||| ||||||||||||||||||||||| ||||| || || |    
T  15358028 cgaagaaaaagatatttgctggtgttggatgatgtatgggatgatggacaagagaattggcagagattgaaatctgtattggcttgcggaggcaagggtg 15357929  T
Q  123 cttcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggctatctgacgaagattgttggga 222  Q
    ||||  ||||||| || || |||||||||||||| |||  ||||||||||||||| ||   |||||| ||||||| ||||||||||  |||||| |||||    
T  15357928 cttcggttttggtaaccactcgtcttccaaaggttgcagcaatcatgggaacaatgccctctcatgatttatcaatgctatctgacacagattgctggga 15357829  T
Q  223 at 224  Q
    ||    
T  15357828 at 15357827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 15347757 - 15347558
Alignment:
Q  25 aagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcgct 124  Q
    |||||||||||| ||||| || |||||||| |||||| ||||| | |||||||||||||| ||||||| || |||||||||||||||||| || || |||    
T  15347757 aagaaaaagatatttgctggtgttggatgatgtgtgggacgacgaccaagagaattggcagagattgagatttgtattggcttgtggaggcaagggtgct 15347658  T
Q  125 tcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatcaaggctatctgacgaagattgttgggaat 224  Q
    || ||||| || || || |||||| ||||||| |||  ||||||||||||||| ||   ||||||  |||||| |||||||||    |||||||||||||    
T  15347657 tcgattttagtaaccactcgtctttcaaaggttgcagcaatcatgggaacaatgccctttcatgatatatcaatgctatctgagactgattgttgggaat 15347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 16414705 - 16414566
Alignment:
Q  69 aacaagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcgcttcaattttggtcactacccgtcttccaaaggtagcaaaaatcat 168  Q
    |||||||||| ||||| || || |||| |||||||||||||||||| || || |||||| ||||||||||||| |||||||||||||| |||  ||| ||    
T  16414705 aacaagagaactggcagaggttaaaatatgtattggcttgtggaggcaagggtgcttcagttttggtcactactcgtcttccaaaggttgcagcaataat 16414606  T
Q  169 gggaacaatacctcatcatgaattatcaaggctatctgac 208  Q
    ||||||| | || | |||||| ||||||  ||||||||||    
T  16414605 gggaacagtgccacctcatgatttatcattgctatctgac 16414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 8187857 - 8187687
Alignment:
Q  25 aagaaaaagatacttgcttgttttggatgacgtgtggaacgacaaacaagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcgct 124  Q
    |||||||||||| ||||| |||||||| || |||||| | ||  ||||||  || ||||| || |||||||||||||||||||||||  || ||||||||    
T  8187857 aagaaaaagatatttgctcgttttggacgatgtgtgggatgatgaacaaggaaactggcagaggttgaaatctgtattggcttgtgggagagaaggcgct 8187758  T
Q  125 tcaattttggtcactacccgtcttccaaaggtagcaaaaatcatgggaacaatacctcatcatgaattatc 195  Q
    ||| |||||||||| || || ||||||||||| |||  |||||||||||||| ||| | |||||| |||||    
T  8187757 tcagttttggtcaccactcgccttccaaaggttgcagcaatcatgggaacaagaccacctcatgatttatc 8187687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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