View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10659_low_13 (Length: 228)

Name: NF10659_low_13
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10659_low_13
NF10659_low_13
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-201)||(170966-171147)
[»] chr4 (4 HSPs)
chr4 (1-135)||(16595268-16595401)
chr4 (1-71)||(7216590-7216660)
chr4 (1-71)||(33722270-33722340)
chr4 (1-71)||(55081064-55081134)
[»] chr2 (1 HSPs)
chr2 (1-134)||(14105246-14105379)
[»] chr8 (4 HSPs)
chr8 (1-135)||(19954935-19955068)
chr8 (1-134)||(19950481-19950614)
chr8 (1-134)||(2470639-2470771)
chr8 (14-71)||(7146493-7146550)
[»] chr1 (5 HSPs)
chr1 (2-134)||(24159115-24159246)
chr1 (18-134)||(25659579-25659694)
chr1 (1-71)||(36725370-36725440)
chr1 (1-134)||(2493121-2493254)
chr1 (1-67)||(23191388-23191454)
[»] chr3 (3 HSPs)
chr3 (1-134)||(48431605-48431735)
chr3 (1-71)||(4662827-4662897)
chr3 (1-71)||(48435250-48435319)
[»] chr6 (4 HSPs)
chr6 (1-135)||(35130288-35130420)
chr6 (1-134)||(32814370-32814503)
chr6 (172-220)||(31045713-31045761)
chr6 (1-74)||(14776205-14776278)
[»] chr5 (1 HSPs)
chr5 (1-71)||(15591255-15591325)


Alignment Details
Target: scaffold0018 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 171147 - 170966
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |  |||                  
T  171147 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagctcttaaatt---ttttta-------------- 171065  T
Q  101 naattcacaaattaagactcatagtgttccaacagagacttcataggaattgtttaaatttgcatcgtggaatatataagtatctagtttttagtgtgat 200  Q
      ||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  171064 --attcacaaattaacactcgtagtgttccaacagcgacttcataggaattgtttaaatttgcatcgtggaatatataagtatctagtttttagtgtgat 170967  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16595401 - 16595268
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||| |          
T  16595401 caaatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctcataaatgagcac-tcaataggatagttgacatgagaattttt 16595303  T
Q  101 naattcacaaattaagactcatagtgttccaacag 135  Q
     |||||||||||||| |||||||||||||||||||    
T  16595302 taattcacaaattaacactcatagtgttccaacag 16595268  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7216660 - 7216590
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7216660 caaattcaatggctaagattagttgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 7216590  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33722340 - 33722270
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    |||||| |||||||| ||||||||||||  || |||||||||||| |||| || | |||||||||||||||    
T  33722340 caaatctaatggctatgattaattgaccgttagaaaatcaatgacttgatctcgcatcataaatgagcact 33722270  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 55081134 - 55081064
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    |||||||||||||||||||||| |||||  || |||||||||| | | || || |||||||||||||||||    
T  55081134 caaatccaatggctaggattaaatgaccgttagaaaatcaatggctttatctcacctcataaatgagcact 55081064  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 14105246 - 14105379
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatga-aannnnn 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |||||| ||         
T  14105246 caaatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctcagaaatgagcac-tcaatgggatagttgacatgagaaatttt 14105344  T
Q  100 nnaattcacaaattaagactcatagtgttccaaca 134  Q
      |||||||||||||| ||||||||||||||||||    
T  14105345 ttaattcacaaattaacactcatagtgttccaaca 14105379  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 19954935 - 19955068
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||| |||||| |          
T  19954935 caaatccattggctaggattagttgacctctacaaaatcaatgacatgatttatcctcataaatgagcac-tcaataggatagttgacatgagaattttt 19955033  T
Q  101 naattcacaaattaagactcatagtgttccaacag 135  Q
     |||||||||||||  |||||||||||||||||||    
T  19955034 taattcacaaattagcactcatagtgttccaacag 19955068  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 19950481 - 19950614
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatga-aannnnn 99  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||||||| | |||| ||         
T  19950481 caaatccaatggctatgattagttgacctctacaaaatcaatgacatgatttctcctcataaatgagcac-tcaataagatagttgatatgagaattttt 19950579  T
Q  100 nnaattcacaaattaagactcatagtgttccaaca 134  Q
      |||||||||||||| ||||||||||||||||||    
T  19950580 ttaattcacaaattaacactcatagtgttccaaca 19950614  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 2470639 - 2470771
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||| ||| | |||  ||||||| |||||| |          
T  2470639 caaatccaatggctaggattagctgacctctacaaaatcaatgacaaaatttctcctcataaatgaacac-tcaatgtgatagttgacatgagaattttt 2470737  T
Q  101 naattcacaaattaagactcatagtgttccaaca 134  Q
     |||||||||||||| ||||||||||||||||||    
T  2470738 taattcacaaattaacactcatagtgttccaaca 2470771  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 7146493 - 7146550
Alignment:
Q  14 taggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    ||||||||||||||| |||||||||||||| | |||| || ||||||||| |||||||    
T  7146493 taggattaattgaccactacaaaatcaatgtcgtgatctcgcctcataaacgagcact 7146550  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 24159246 - 24159115
Alignment:
Q  2 aaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnnn 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| | ||| ||| |||| |||||||            
T  24159246 aaatccaatggctaggattagttgacctctacaaaatcaatgacataatttctccttataaatgagcac-tcaatgggacagttgacatgaagatttttt 24159148  T
Q  102 aattcacaaattaagactcatagtgttccaaca 134  Q
    |||||||||||||| ||||||||||||||||||    
T  24159147 aattcacaaattaacactcatagtgttccaaca 24159115  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 25659694 - 25659579
Alignment:
Q  18 attaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnnnaattcacaaattaaga 117  Q
    |||| |||||| ||||||||||||||||||||| |||||| |||||||||||| | |||  ||||||| |||||| |       |||||||||||||| |    
T  25659694 attagttgaccgctacaaaatcaatgacatgatctctcctaataaatgagcac-tcaatgagatagttgacatgagaattttttaattcacaaattaaca 25659596  T
Q  118 ctcatagtgttccaaca 134  Q
    |||||||||||||||||    
T  25659595 ctcatagtgttccaaca 25659579  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36725370 - 36725440
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    ||||||||||||||||||||||||||||  || |||||||||| | |||| || | |||||||||||||||    
T  36725370 caaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatcataaatgagcact 36725440  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2493254 - 2493121
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatga-aannnnn 99  Q
    ||||| |||||| |||||||| ||| || | ||||||||||||||||||| |  ||||||||||||||||| |||  |||||||| |||||| ||         
T  2493254 caaattcaatggttaggattagttggccaccacaaaatcaatgacatgatattgcctcataaatgagcactcaaa-gggatagttgacatgagaattttt 2493156  T
Q  100 nnaattcacaaattaagactcatagtgttccaaca 134  Q
      |||||||| ||||| || |||||||||||||||    
T  2493155 ttaattcacatattaacacccatagtgttccaaca 2493121  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23191454 - 23191388
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgag 67  Q
    |||||||||||| |||||||| |||||| | ||||||||||||||||||| |  | |||||||||||    
T  23191454 caaatccaatggttaggattagttgaccaccacaaaatcaatgacatgatattgcttcataaatgag 23191388  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48431735 - 48431605
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    ||||||||||||||||||||| ||||| |||||||  ||||||||||||||||| ||||||||||||||| | |||  ||||||| |||||| |          
T  48431735 caaatccaatggctaggattagttgacatctacaa--tcaatgacatgatttcttctcataaatgagcac-tcaatgagatagttgacatgagaattttt 48431639  T
Q  101 naattcacaaattaagactcatagtgttccaaca 134  Q
     |||||||||||||| ||||||||||||||||||    
T  48431638 taattcacaaattaacactcatagtgttccaaca 48431605  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4662827 - 4662897
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  4662827 caaatccaatgcctaggattagttgaccgctacaaaatcaatgacataatttctcctcataaatgagcact 4662897  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 48435319 - 48435250
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  48435319 caaatccaatggctaggattagttgacatctacaaa-tcaatgacatgatttctcctcataaatgagcact 48435250  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 35130288 - 35130420
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatgaaannnnnn 100  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | |||  ||||||| || ||| |          
T  35130288 caaatccaatgactaggattagttgacatctacaaa-tcaatgacatgatttctcctcataaatgagcac-tcaatgagatagttgacgtgagaattttg 35130385  T
Q  101 naattcacaaattaagactcatagtgttccaacag 135  Q
     |||||||||||||| ||||||| |||||||||||    
T  35130386 taattcacaaattaacactcataatgttccaacag 35130420  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 32814503 - 32814370
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaaattggatagttaacatga-aannnnn 99  Q
    |||||||| |||||||||||| |||||| | ||||||||||||||||||| | ||||||||||| |||| || ||| ||||| || |||||| ||         
T  32814503 caaatccattggctaggattagttgaccaccacaaaatcaatgacatgatatttcctcataaataagca-ttcaatgggataattgacatgataattttt 32814405  T
Q  100 nnaattcacaaattaagactcatagtgttccaaca 134  Q
      |||||||| ||||| ||||||||||||||||||    
T  32814404 ttaattcacatattaacactcatagtgttccaaca 32814370  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31045713 - 31045761
Alignment:
Q  172 atatataagtatctagtttttagtgtgatggcattgttaatcactttac 220  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  31045713 atatatgagtatctaatttttagtgtgatggcattgttaatcactttac 31045761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14776205 - 14776278
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcacttaa 74  Q
    |||||||||||| |||||||| |||||| |   ||||| ||| ||||||| || ||||||||||||||||||||    
T  14776205 caaatccaatggttaggattagttgaccgccggaaaattaataacatgatctcgcctcataaatgagcacttaa 14776278  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15591255 - 15591325
Alignment:
Q  1 caaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagcact 71  Q
    |||||||||||  |||||||| |||| | |||||| |||||||||||||| || |||||||||||||||||    
T  15591255 caaatccaatgattaggattagttgatcgctacaatatcaatgacatgatctcgcctcataaatgagcact 15591325  T

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