View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10659_low_14 (Length: 206)
Name: NF10659_low_14
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 2983133 - 2983242
Alignment:
| Q |
24 |
gctctagatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactga |
123 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2983133 |
gctctagatattaagagttttgactttctgaatgattataagttaactttcttttcttgttattgtgttattttgtacttgctcataaacatgagactga |
2983232 |
T |
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| Q |
124 |
ttgatcaagg |
133 |
Q |
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|||||||||| |
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| T |
2983233 |
ttgatcaagg |
2983242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 2708838 - 2708729
Alignment:
| Q |
24 |
gctctagatatt-aagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactg |
122 |
Q |
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|||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2708838 |
gctctagatattcaagattttt-attttctgaatgattattagttaattttcttttcttgttattgtgttattttatacttgctcataaacaagagactg |
2708740 |
T |
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| Q |
123 |
attgatcaagg |
133 |
Q |
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||||||||||| |
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| T |
2708739 |
attgatcaagg |
2708729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 2706354 - 2706245
Alignment:
| Q |
24 |
gctctagatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactga |
123 |
Q |
| |
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|||||||||||| | |||| ||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
2706354 |
gctctagatattcaagttttttattttctgcatgattattagttaattttcttttcttgtttttgtgttattttgtacttgctcataaacaagcgaccta |
2706255 |
T |
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| Q |
124 |
ttgatcaagg |
133 |
Q |
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|||||||||| |
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| T |
2706254 |
ttgatcaagg |
2706245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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