View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10659_low_2 (Length: 463)
Name: NF10659_low_2
Description: NF10659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10659_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 32627212 - 32627631
Alignment:
| Q |
1 |
catttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagtaggaatgggtcgtgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32627212 |
catttgaaatatttacaaacgagcaaagatcaatactaatgtttgaaatgctccacatcaggtttaggttgacctaatgtagtaggaatgggtcgtgacc |
32627311 |
T |
|
| Q |
101 |
catcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32627312 |
catcaataaaagaaaatatgcatcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgtt |
32627411 |
T |
|
| Q |
201 |
ggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32627412 |
ggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttgga |
32627511 |
T |
|
| Q |
301 |
attgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32627512 |
attgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaatcac |
32627611 |
T |
|
| Q |
401 |
caatcaacaaaaaatatcta |
420 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32627612 |
caatcaacaaaaaatatcta |
32627631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 129 - 410
Target Start/End: Original strand, 32708921 - 32709202
Alignment:
| Q |
129 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg |
228 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
32708921 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg |
32709020 |
T |
|
| Q |
229 |
ttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacatt |
328 |
Q |
| |
|
||| |||||||| ||| |||||||||| ||| | ||||||||||||||||||||||| ||||| |||| ||||| |||||||| || | | ||||| |
|
|
| T |
32709021 |
ttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaattggttgtagtacgcagtaagtacatt |
32709120 |
T |
|
| Q |
329 |
caaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaa |
410 |
Q |
| |
|
|||||||||| | | || |||||||||||||| ||||||| || ||| ||||||||| |||| |||||||||||| |
|
|
| T |
32709121 |
tgaggggcttgtacgagccatgtaaatgttgcccttattgttgttcacattctccggaacctaaataatcaccaatcaacaa |
32709202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 394
Target Start/End: Original strand, 32703483 - 32703757
Alignment:
| Q |
122 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttc-ttcc |
220 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||| ||||||||| || |||||||| |||||||||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
32703483 |
atcatagtttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgcttgatggatcttcgctttttctttcc |
32703582 |
T |
|
| Q |
221 |
tacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttg |
320 |
Q |
| |
|
| ||| || | || || || || |||||||||| ||| ||||||||| || ||||||| ||||||||| || |||| | ||||||||||| |
|
|
| T |
32703583 |
aataaaagtaagaaccaggctcccaccttcaactaactctagggcacgacattttagaaaaaatgagaaatcttttctatattgttcatagtaagcctta |
32703682 |
T |
|
| Q |
321 |
acgacattcaaggggcttgtgctgg-atatataaatgttgcccttgttgttgtctgcaccctcaggaacctaatt |
394 |
Q |
| |
|
| |||| | ||||||||||||||| | ||||| ||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
32703683 |
atgacacttgaggggcttgtgctggcccaagtaaatattgcctttgttgttgtctacaccgtccggaacctaatt |
32703757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 396
Target Start/End: Original strand, 7292554 - 7292713
Alignment:
| Q |
237 |
atgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc |
336 |
Q |
| |
|
|||| |||||||||||| | ||| | || |||||||||||||||| || || ||| |||| ||||||| ||||||||||||||||||||| |||| | |
|
|
| T |
7292554 |
atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac |
7292653 |
T |
|
| Q |
337 |
ttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaa |
396 |
Q |
| |
|
||||| | || |||||||| ||||| ||||| ||| ||| || ||||||||||||| |
|
|
| T |
7292654 |
ttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaattaa |
7292713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 393
Target Start/End: Original strand, 7297579 - 7297745
Alignment:
| Q |
227 |
tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgaca |
326 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| || ||||||||||||||||||| ||||| ||| ||| ||||| | ||||| || ||||| ||| |
|
|
| T |
7297579 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca |
7297678 |
T |
|
| Q |
327 |
ttcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaat |
393 |
Q |
| |
|
|| |||| |||||| | || |||||||||| ||| ||||| ||| |||||| |||||||||| |
|
|
| T |
7297679 |
tttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat |
7297745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 122 - 387
Target Start/End: Original strand, 5810958 - 5811223
Alignment:
| Q |
122 |
atcatactttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcct |
221 |
Q |
| |
|
|||||| | ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||| | |||||| |||| |
|
|
| T |
5810958 |
atcatagtctacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgttttttcgtcct |
5811057 |
T |
|
| Q |
222 |
acaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttga |
321 |
Q |
| |
|
| |||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
5811058 |
aaaaatgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgt |
5811157 |
T |
|
| Q |
322 |
cgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaa |
387 |
Q |
| |
|
|||||| ||||||||||||| | | |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5811158 |
ggacatttgaggggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaa |
5811223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 131 - 402
Target Start/End: Original strand, 27736240 - 27736511
Alignment:
| Q |
131 |
tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt |
230 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| || |||| |
|
|
| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
231 |
ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca |
330 |
Q |
| |
|
| |||||| | | |||||||||| ||||| ||||||||| ||||||| |||||||||| || | |||||||||||||||||||||| ||| || |
|
|
| T |
27736340 |
agaatcatttgagctccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctgttcgaaattgcttgtagtaagccttgatgacgtttg |
27736439 |
T |
|
| Q |
331 |
aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataacca |
402 |
Q |
| |
|
||||||||||||| | | |||||||| |||||||||||||| |||||||| |||||||||| ||| |||| |
|
|
| T |
27736440 |
aggggcttgtgctcgtcaggtaaatgtttcccttgttgttgtcagcaccctctggaacctaatgaatcacca |
27736511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 397
Target Start/End: Original strand, 21943144 - 21943341
Alignment:
| Q |
200 |
tggattgtcgctttttcttcctacaaatgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttgg |
299 |
Q |
| |
|
||||||||||| || |||| ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| | || |
|
|
| T |
21943144 |
tggattgtcgcattctcttactaaaaatgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatga |
21943243 |
T |
|
| Q |
300 |
aattgcttgtagtaagccttgacgacattcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaat |
397 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||| | | | |||||||||||||| ||||||||| |||||| ||| ||||| ||||| |
|
|
| T |
21943244 |
aattgctcatagtaagccttgaagacatttgaggggcttgtggtcgccaagtaaatgttgcccttattgttgtctacacccttagggacctatttaat |
21943341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 141 - 414
Target Start/End: Complemental strand, 20116800 - 20116527
Alignment:
| Q |
141 |
accatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgttataatcatgc |
240 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||||| | | |||||| ||||| || |||| |||||||| |||||| | |||||||| |
|
|
| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaaggtaacaaaccccattgcttaatggatcatcactttctcttcctataaatgtcagaatcatgc |
20116701 |
T |
|
| Q |
241 |
aacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgt |
340 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||||||||||||||||||||||| || | ||||| | || || ||||||| |||||| | |||||||| |
|
|
| T |
20116700 |
aacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatcaatacgaaattgttcataatatgccttgaagacatttgatgggcttgt |
20116601 |
T |
|
| Q |
341 |
gctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaaaaaa |
414 |
Q |
| |
|
| | | ||| ||||| |||||||||||||||| |||| | |||||||||||||| ||| ||| |||||||| |
|
|
| T |
20116600 |
gttcgctatgtaaatattgcccttgttgttgttcacaccattgggaacctaattaatcaccgatcgacaaaaaa |
20116527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 21943097 - 21943132
Alignment:
| Q |
141 |
accatgtcattaagagccatagccaaaagttcccaa |
176 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21943097 |
accatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 403
Target Start/End: Complemental strand, 8030641 - 8030369
Alignment:
| Q |
131 |
tacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatgtt |
230 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| | ||| |||||||| || |||||||| ||||| | || || ||||||||||| | | ||| |
|
|
| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg |
8030542 |
T |
|
| Q |
231 |
ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca |
330 |
Q |
| |
|
| || ||| | |||||| ||||| | |||||| ||||||||||||||||| | ||||||||| |||| ||||||| | |||||| |||| || || |
|
|
| T |
8030541 |
agaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgctcatggtaagcgttgagcacgtttg |
8030442 |
T |
|
| Q |
331 |
aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaa |
403 |
Q |
| |
|
|||||||||| | | || |||||||| ||||| || || ||| |||| | |||||||||| |||| ||||| |
|
|
| T |
8030441 |
cggggcttgtggtagccatgtaaatgttacccttattattctctacacctttaggaacctaagtaatcaccaa |
8030369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University